Cucsa.280970 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.280970 T284492_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.703 0.806
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.703 0.806
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.703 0.806
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.280970.1 Myb 120 167
Cucsa.280970.2 Myb 120 167
Cucsa.280970.3 Myb 120 167
Cucsa.280970.4 Myb 120 167
Cucsa.280970.5 Myb 120 167
Cucsa.280970.6 Myb 120 167

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.862
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.852
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.845
Cla020348 Citrullus lanatus Cla020348 I 0.844
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.831
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.831
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.831
TCM_007672 Theobroma cacao TCM_007672 I 0.831
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.822
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.820
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.818
30131.m007263 Ricinus communis 30131.m007263 I 0.818
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.813
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.812
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.808
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.806
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.804
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.799
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.794
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.794
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.793
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.793
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N 0.792
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.792
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.791
Lus10041001.g Linum usitatissimum Lus10041001.g N 0.786
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.775
PK13672.1 Cannabis sativa PK13672.1 I 0.775
Pm006046 Prunus mume Pm006046 I 0.774
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.772
Ca_19000 Cicer arietinum Ca_19000 I 0.771
Cla009230 Citrullus lanatus Cla009230 I 0.771
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.765
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.756
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.756
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N 0.746
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.745
mgf009460m Mimulus guttatus mgf009460m I 0.743
Si022762m.g Setaria italica Si022762m.g N 0.740
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.721
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.721
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.717
OB04G36550 Oryza brachyantha OB04G36550 N 0.716
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N 0.716
Pm017050 Prunus mume Pm017050 I 0.709
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.709
Ca_05454 Cicer arietinum Ca_05454 I 0.708
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.703
SRM1 Arabidopsis thaliana AT5G08520 D 0.703
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.703
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.703
SapurV1A.0450s0110 Salix purpurea SapurV1A.0450s0110 I 0.701
SapurV1A.1671s0040 Salix purpurea SapurV1A.1671s0040 I 0.701
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N 0.699
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.698
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.698
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.697
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.697
Aquca_072_00078 Aquilegia coerulea Aquca_072_00078 N 0.694
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.692
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.687
TCM_041160 Theobroma cacao TCM_041160 I 0.685
MDP0000289018 Malus domestica MDP0000289018 I 0.684
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.679
cassava42566.valid.m1 Manihot esculenta cassava42566.valid.m1 N 0.679
orange1.1g026855m.g Citrus sinensis orange1.1g026855m.g N 0.675
Ciclev10029205m.g Citrus clementina Ciclev10029205m.g N 0.675
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.673
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.672
ONIVA04G28100 Oryza nivara ONIVA04G28100 N 0.671
OMERI04G25000 Oryza meridionalis OMERI04G25000 N 0.671
OS04G0676700 Oryza sativa OS04G0676700 N 0.671
ORUFI04G31270 Oryza rufipogon ORUFI04G31270 N 0.671
BGIOSGA014092 Oryza indica BGIOSGA014092 N 0.671
OPUNC04G27130 Oryza punctata OPUNC04G27130 N 0.671
ORGLA04G0258700 Oryza glaberrima ORGLA04G0258700 N 0.671
OBART04G29570 Oryza barthii OBART04G29570 N 0.671
Cla013899 Citrullus lanatus Cla013899 N 0.670
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.669
30055.m001589 Ricinus communis 30055.m001589 I 0.666
BRADI5G26110 Brachypodium distachyon BRADI5G26110 N 0.666
Bostr.26675s0270 Boechera stricta Bostr.26675s0270 I 0.664
TCM_041362 Theobroma cacao TCM_041362 N 0.662
OGLUM04G29490 Oryza glumaepatula OGLUM04G29490 N 0.662
TCM_012262 Theobroma cacao TCM_012262 I 0.661
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I 0.661