Gorai.006G063000 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.006G063000 T287584_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G49010
M01269_2.00 		Arabidopsis thaliana
NNYWATCNN
NNGATWRNN		 PBM
Lambert et al.(2019)
pTH11535 		0.725 0.815
AT1G49010
M07022_2.00 		Arabidopsis thaliana
NHHWWYCTTATCYWH
DWRGATAAGRWWDDN		 Dap-seq
OMalley et al.(2016)
At1g49010_col_a 		0.725 0.815
AT1G49010
M07023_2.00 		Arabidopsis thaliana
WWYCTTATCYWHWHH
DDWDWRGATAAGRWW		 Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a 		0.725 0.815
PK19621.1
M01280_2.00 		Cannabis sativa
NNTTATCYN
NRGATAANN		 PBM
Lambert et al.(2019)
pTH10140 		0.693 0.815
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G063000.1 Myb 133 178

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0583s0020 Salix purpurea SapurV1A.0583s0020 I 0.815
POPTR_0012s05720 Populus trichocarpa POPTR_0012s05720 I 0.802
TCM_012262 Theobroma cacao TCM_012262 I 0.799
GLYMA05G07980 Glycine max GLYMA05G07980 I 0.782
Pm030197 Prunus mume Pm030197 I 0.781
PRUPE_ppa009092mg Prunus persica PRUPE_ppa009092mg I 0.781
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I 0.780
Ca_06612 Cicer arietinum Ca_06612 I 0.773
30174.m008717 Ricinus communis 30174.m008717 I 0.770
MTR_4g111975 Medicago truncatula MTR_4g111975 I 0.762
GLYMA17G13010 Glycine max GLYMA17G13010 I 0.762
MDP0000853568 Malus domestica MDP0000853568 I 0.747
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I 0.745
Thhalv10011650m.g Eutrema salsugineum Thhalv10011650m.g I 0.743
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I 0.732
gene26214-v1.0-hybrid Fragaria vesca gene26214-v1.0-hybrid I 0.731
scaffold_104540.1 Arabidopsis lyrata scaffold_104540.1 I 0.730
chr4.LjB15O07.50.nc Lotus japonicus chr4.LjB15O07.50.nc I 0.730
Bostr.26675s0270 Boechera stricta Bostr.26675s0270 I 0.725
AT1G49010 Arabidopsis thaliana AT1G49010 D 0.725
cassava2458.valid.m1 Manihot esculenta cassava2458.valid.m1 N 0.712
MDP0000241185 Malus domestica MDP0000241185 N 0.699
Cagra.1613s0002 Capsella grandiflora Cagra.1613s0002 I 0.697
Carubv10009808m.g Capsella rubella Carubv10009808m.g I 0.697
Bo6g018000 Brassica oleracea Bo6g018000 I 0.695
PK19621.1 Cannabis sativa PK19621.1 D 0.693
VIT_17s0000g04130 Vitis vinifera VIT_17s0000g04130 I 0.690
Bra014169 Brassica rapa Bra014169 I 0.689
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.689
Bra018772 Brassica rapa Bra018772 I 0.687
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.682
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.678
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.678
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.678
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.678
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.678
TCM_007672 Theobroma cacao TCM_007672 I 0.678
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.677
Bo00685s060 Brassica oleracea Bo00685s060 I 0.677
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.677
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.675
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.672
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.672
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.672
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.671
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.671
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.669
mgf017230m Mimulus guttatus mgf017230m N 0.669
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.666
30131.m007263 Ricinus communis 30131.m007263 I 0.665
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.665
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.665
Aquca_026_00199 Aquilegia coerulea Aquca_026_00199 N 0.661