gene23544-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene23544-v1.0-hybrid T287364_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04760
M02304_2.00 		Arabidopsis thaliana
NDGATAAGGN
NCCTTATCHN		 PBM
Weirauch et al.(2014)
pTH7079 		0.703 0.777
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna23544.1-v1.0-hybrid Myb 118 165

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm017050 Prunus mume Pm017050 I 0.801
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.797
TCM_041160 Theobroma cacao TCM_041160 I 0.749
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.746
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.743
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.743
MDP0000289018 Malus domestica MDP0000289018 I 0.738
Ca_05454 Cicer arietinum Ca_05454 I 0.736
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.726
Aquca_072_00078 Aquilegia coerulea Aquca_072_00078 N 0.707
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.706
MDP0000610242 Malus domestica MDP0000610242 N 0.706
Bostr.13129s0486 Boechera stricta Bostr.13129s0486 I 0.703
scaffold_600421.1 Arabidopsis lyrata scaffold_600421.1 I 0.703
Bo3g002960 Brassica oleracea Bo3g002960 I 0.703
Carubv10003623m.g Capsella rubella Carubv10003623m.g I 0.703
Bra009432 Brassica rapa Bra009432 I 0.703
Bo9g178980 Brassica oleracea Bo9g178980 I 0.703
AT5G04760 Arabidopsis thaliana AT5G04760 D 0.703
Cagra.5249s0014 Capsella grandiflora Cagra.5249s0014 I 0.703
GSMUA_Achr8G02260_001 Musa acuminata GSMUA_Achr8G02260_001 N 0.698
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.696
30055.m001589 Ricinus communis 30055.m001589 I 0.695
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I 0.694
SapurV1A.0036s0350 Salix purpurea SapurV1A.0036s0350 I 0.690
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.688
Cla009230 Citrullus lanatus Cla009230 I 0.688
SapurV1A.1671s0040 Salix purpurea SapurV1A.1671s0040 I 0.688
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.687
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.687
Thhalv10014613m.g Eutrema salsugineum Thhalv10014613m.g I 0.680
Bra005818 Brassica rapa Bra005818 I 0.679
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.679
PGSC0003DMG400007603 Solanum tuberosum PGSC0003DMG400007603 N 0.678
TCM_041362 Theobroma cacao TCM_041362 N 0.678
GSMUA_Achr11G09110_001 Musa acuminata GSMUA_Achr11G09110_001 N 0.677
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.676
POPTR_0010s24710 Populus trichocarpa POPTR_0010s24710 I 0.676
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.675
30131.m007263 Ricinus communis 30131.m007263 I 0.675
Gorai.006G118200 Gossypium raimondii Gorai.006G118200 I 0.671
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.670
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.669
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.669
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.669
Bo2g006670 Brassica oleracea Bo2g006670 I 0.668
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.667
PK13672.1 Cannabis sativa PK13672.1 I 0.666
Bra028780 Brassica rapa Bra028780 I 0.666
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.665
TCM_007672 Theobroma cacao TCM_007672 I 0.665
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.665
Pm006046 Prunus mume Pm006046 I 0.664
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.664
Cla013899 Citrullus lanatus Cla013899 N 0.663
SapurV1A.0450s0110 Salix purpurea SapurV1A.0450s0110 I 0.663
Cla020348 Citrullus lanatus Cla020348 I 0.661