PK13672.1 (Cannabis sativa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PK13672.1 T290401_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.691 0.804
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.691 0.804
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.691 0.804
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK13672.1 Myb 121 166

Links

Other Myb/SANT family TFs
Other Cannabis sativa TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.817
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.811
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.807
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.806
30131.m007263 Ricinus communis 30131.m007263 I 0.806
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.806
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.803
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.801
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.796
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.796
TCM_007672 Theobroma cacao TCM_007672 I 0.796
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.796
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.796
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.795
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.787
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.781
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.775
Pm006046 Prunus mume Pm006046 I 0.773
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.770
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.770
Cla009230 Citrullus lanatus Cla009230 I 0.766
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.766
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.764
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.759
Cla020348 Citrullus lanatus Cla020348 I 0.758
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.758
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.758
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.757
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.749
Ca_19000 Cicer arietinum Ca_19000 I 0.749
mgf009460m Mimulus guttatus mgf009460m I 0.745
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.742
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.742
Si022762m.g Setaria italica Si022762m.g N 0.737
Lus10041001.g Linum usitatissimum Lus10041001.g N 0.735
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.732
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.723
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N 0.718
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.710
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N 0.698
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.694
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.694
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.693
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.691
SRM1 Arabidopsis thaliana AT5G08520 D 0.691
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.691
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.691
OB04G36550 Oryza brachyantha OB04G36550 N 0.689
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N 0.688
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.686
Ca_05454 Cicer arietinum Ca_05454 I 0.684
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.684
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.684
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.680
Pm017050 Prunus mume Pm017050 I 0.673
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.673
BGIOSGA014092 Oryza indica BGIOSGA014092 N 0.668
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N 0.668
OS04G0676700 Oryza sativa OS04G0676700 N 0.668
ORUFI04G31270 Oryza rufipogon ORUFI04G31270 N 0.668
OBART04G29570 Oryza barthii OBART04G29570 N 0.668
OMERI04G25000 Oryza meridionalis OMERI04G25000 N 0.668
ONIVA04G28100 Oryza nivara ONIVA04G28100 N 0.668
ORGLA04G0258700 Oryza glaberrima ORGLA04G0258700 N 0.668
BRADI5G26110 Brachypodium distachyon BRADI5G26110 N 0.667
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.667
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.666
orange1.1g026855m.g Citrus sinensis orange1.1g026855m.g N 0.664
Ciclev10029205m.g Citrus clementina Ciclev10029205m.g N 0.664
TCM_041160 Theobroma cacao TCM_041160 I 0.661