Cla020348 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla020348 T283315_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SRM1
M02307_2.00
Arabidopsis thaliana
NNHNATCNN

NNGATNDNN
PBM
Weirauch et al.(2014)
pTH7080
0.716 0.817
SRM1
M07121_2.00
Arabidopsis thaliana
YCTTATCYWHW

WDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a
0.716 0.817
SRM1
M07122_2.00
Arabidopsis thaliana
YCTTATCYWHWWH

DWWDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_col_b
0.716 0.817
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla020348 Myb 120 167

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.844
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.834
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.824
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.824
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.815
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.814
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.813
TCM_007672 Theobroma cacao TCM_007672 I 0.813
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.813
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.806
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.803
30131.m007263 Ricinus communis 30131.m007263 I 0.800
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.800
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.795
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.794
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.792
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.788
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.784
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.779
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.776
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.776
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.775
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.775
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.773
PK13672.1 Cannabis sativa PK13672.1 I 0.758
Pm006046 Prunus mume Pm006046 I 0.756
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.755
Ca_19000 Cicer arietinum Ca_19000 I 0.754
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N 0.754
mgf009460m Mimulus guttatus mgf009460m I 0.754
Cla009230 Citrullus lanatus Cla009230 I 0.753
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N 0.753
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.753
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.747
Lus10041001.g Linum usitatissimum Lus10041001.g N 0.746
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.738
SRM1 Arabidopsis thaliana AT5G08520 D 0.716
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.716
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.716
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.716
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.715
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.711
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.705
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.704
Si022762m.g Setaria italica Si022762m.g N 0.699
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.695
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.695
Pm017050 Prunus mume Pm017050 I 0.691
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N 0.691
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N 0.681
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.680
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.680
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.679
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.679
cassava42566.valid.m1 Manihot esculenta cassava42566.valid.m1 N 0.678
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.678
30055.m001589 Ricinus communis 30055.m001589 I 0.676
VIT_18s0001g02210 Vitis vinifera VIT_18s0001g02210 N 0.676
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.676
OB04G36550 Oryza brachyantha OB04G36550 N 0.675
Ciclev10029205m.g Citrus clementina Ciclev10029205m.g N 0.674
orange1.1g026855m.g Citrus sinensis orange1.1g026855m.g N 0.674
MDP0000289018 Malus domestica MDP0000289018 I 0.671
Bo9g174380 Brassica oleracea Bo9g174380 I 0.668
Ca_05454 Cicer arietinum Ca_05454 I 0.668
TCM_041160 Theobroma cacao TCM_041160 I 0.666
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.661
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.661