POPTR_0001s25590 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0001s25590 T278197_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.784 0.883
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.784 0.883
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.747 0.862
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.736 0.862
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.736 0.862
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.715 0.851
AT3G11280
M01075_2.00 		Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN		 PBM
Sullivan et al.(2014)
pTH7245 		0.679 0.777
AT3G11280
M07074_2.00 		Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH		 Dap-seq
OMalley et al.(2016)
At3g11280_col_a 		0.679 0.777
AT3G11280
M07075_2.00 		Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN		 Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a 		0.679 0.777
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s25590.1 Myb 133 180

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf022442m Mimulus guttatus mgf022442m I 0.844
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.835
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.835
29681.m001296 Ricinus communis 29681.m001296 I 0.823
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.807
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.801
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.789
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.788
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.784
PK27213.1 Cannabis sativa PK27213.1 D 0.784
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.783
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.783
GLYMA18G07250 Glycine max GLYMA18G07250 I 0.774
GLYMA11G22960 Glycine max GLYMA11G22960 I 0.774
MTR_5g069710 Medicago truncatula MTR_5g069710 I 0.772
TCM_041672 Theobroma cacao TCM_041672 I 0.772
GLYMA02G39000 Glycine max GLYMA02G39000 I 0.771
VIT_06s0004g06100 Vitis vinifera VIT_06s0004g06100 I 0.770
MTR_3g462790 Medicago truncatula MTR_3g462790 I 0.770
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.769
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.769
cassava23290.valid.m1 Manihot esculenta cassava23290.valid.m1 I 0.763
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.760
Ca_15603 Cicer arietinum Ca_15603 I 0.750
Bra002610 Brassica rapa Bra002610 I 0.749
Bra006741 Brassica rapa Bra006741 I 0.747
PK27693.1 Cannabis sativa PK27693.1 D 0.747
Bo3g018460 Brassica oleracea Bo3g018460 I 0.747
gene07984-v1.0-hybrid Fragaria vesca gene07984-v1.0-hybrid I 0.747
Eucgr.J01940 Eucalyptus grandis Eucgr.J01940 I 0.745
Solyc06g076770.2 Solanum lycopersicum Solyc06g076770.2 I 0.745
PGSC0003DMG400030348 Solanum tuberosum PGSC0003DMG400030348 I 0.745
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.742
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.742
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.742
Ca_14247 Cicer arietinum Ca_14247 I 0.740
Cla013553 Citrullus lanatus Cla013553 I 0.739
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.739
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.738
POPTR_0016s11980 Populus trichocarpa POPTR_0016s11980 I 0.737
Cla018399 Citrullus lanatus Cla018399 I 0.737
Cucsa.067080 Cucumis sativus Cucsa.067080 I 0.737
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.736
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.736
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.736
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.736
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.736
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.735
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.735
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.733
28288.m000014 Ricinus communis 28288.m000014 I 0.733
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.731
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.731
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.731
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.731
GLYMA03G14440 Glycine max GLYMA03G14440 I 0.730
GLYMA01G27720 Glycine max GLYMA01G27720 I 0.730
MDP0000292581 Malus domestica MDP0000292581 I 0.728
MDP0000255630 Malus domestica MDP0000255630 I 0.728
MDP0000243328 Malus domestica MDP0000243328 I 0.728
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.726
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.722
TCM_021750 Theobroma cacao TCM_021750 I 0.722
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.722
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.721
MDP0000142580 Malus domestica MDP0000142580 I 0.721
MDP0000221993 Malus domestica MDP0000221993 I 0.721
Ca_19327 Cicer arietinum Ca_19327 I 0.721
29610.m000410 Ricinus communis 29610.m000410 I 0.719
SapurV1A.0001s0790 Salix purpurea SapurV1A.0001s0790 I 0.718
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.718
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.718
Eucgr.B02800 Eucalyptus grandis Eucgr.B02800 I 0.717
cassava30173.valid.m1 Manihot esculenta cassava30173.valid.m1 I 0.716
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.715
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.715
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.715
Bo4g029810 Brassica oleracea Bo4g029810 I 0.715
Bra017138 Brassica rapa Bra017138 I 0.715
Bo4g187390 Brassica oleracea Bo4g187390 I 0.715
Bra005139 Brassica rapa Bra005139 I 0.715
Bra000038 Brassica rapa Bra000038 I 0.715
Bo3g032160 Brassica oleracea Bo3g032160 I 0.715
Pm000529 Prunus mume Pm000529 I 0.715
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.715
Pm002536 Prunus mume Pm002536 I 0.712
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.712
Cla018243 Citrullus lanatus Cla018243 I 0.711
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.709
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.709
Bo9g135730 Brassica oleracea Bo9g135730 I 0.709
POPTR_0006s09860 Populus trichocarpa POPTR_0006s09860 I 0.708
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.707
PRUPE_ppa009072mg Prunus persica PRUPE_ppa009072mg I 0.706
Cla004397 Citrullus lanatus Cla004397 I 0.704
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.704
Pm018878 Prunus mume Pm018878 I 0.704
VIT_08s0007g01920 Vitis vinifera VIT_08s0007g01920 I 0.703
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.703
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.702
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.700
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.698
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.698
Gorai.006G180900 Gossypium raimondii Gorai.006G180900 I 0.697
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.697
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.696
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.696
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I 0.694
fgenesh2_kg.4__1876__AT2G38090.1 Arabidopsis lyrata fgenesh2_kg.4__1876__AT2G38090.1 I 0.692
Thhalv10017008m.g Eutrema salsugineum Thhalv10017008m.g I 0.692
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.689
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.688
cassava42566.valid.m1 Manihot esculenta cassava42566.valid.m1 N 0.688
GSMUA_Achr10G02290_001 Musa acuminata GSMUA_Achr10G02290_001 I 0.684
PK15104.1 Cannabis sativa PK15104.1 I 0.684
Cucsa.176140 Cucumis sativus Cucsa.176140 I 0.681
Bo5g136680 Brassica oleracea Bo5g136680 I 0.679
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.679
Bra034173 Brassica rapa Bra034173 I 0.679
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.679
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.679
PGSC0003DMG400019129 Solanum tuberosum PGSC0003DMG400019129 I 0.676
MDP0000277813 Malus domestica MDP0000277813 I 0.676
Solyc03g096350.2 Solanum lycopersicum Solyc03g096350.2 I 0.673
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I 0.671
Thhalv10014410m.g Eutrema salsugineum Thhalv10014410m.g I 0.670
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.668
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.668
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.668
Bra034853 Brassica rapa Bra034853 I 0.668
Lus10035518.g Linum usitatissimum Lus10035518.g I 0.667
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.664
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.664
Bo1g141120 Brassica oleracea Bo1g141120 I 0.662
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.662
TCM_041362 Theobroma cacao TCM_041362 N 0.662
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.662
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.662
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.662
Cla020348 Citrullus lanatus Cla020348 I 0.661