Thhalv10014410m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10014410m.g T290053_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.703 0.819
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.697 0.787
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.697 0.787
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.671 0.777
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.671 0.777
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10014410m Myb 145 192

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.6251s0088 Boechera stricta Bostr.6251s0088 I 0.862
Cagra.7888s0001 Capsella grandiflora Cagra.7888s0001 N 0.829
Carubv10001741m.g Capsella rubella Carubv10001741m.g N 0.829
AT5G01200 Arabidopsis thaliana AT5G01200 N 0.812
fgenesh1_pg.C_scaffold_6000079 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000079 N 0.792
Bo2g002350 Brassica oleracea Bo2g002350 I 0.773
Bra028892 Brassica rapa Bra028892 I 0.748
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.721
Bra002610 Brassica rapa Bra002610 I 0.710
Bra017138 Brassica rapa Bra017138 I 0.707
Bo4g187390 Brassica oleracea Bo4g187390 I 0.707
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.703
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.703
Bo9g135730 Brassica oleracea Bo9g135730 I 0.700
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.697
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.697
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.697
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.697
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.697
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.696
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.696
Bra005139 Brassica rapa Bra005139 I 0.696
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.696
Bo4g029810 Brassica oleracea Bo4g029810 I 0.696
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.696
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.694
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.694
Bra006741 Brassica rapa Bra006741 I 0.691
Bo3g018460 Brassica oleracea Bo3g018460 I 0.691
28288.m000014 Ricinus communis 28288.m000014 I 0.682
Lus10035518.g Linum usitatissimum Lus10035518.g I 0.681
Bo3g032160 Brassica oleracea Bo3g032160 I 0.679
Bra000038 Brassica rapa Bra000038 I 0.679
fgenesh2_kg.4__1876__AT2G38090.1 Arabidopsis lyrata fgenesh2_kg.4__1876__AT2G38090.1 I 0.679
Pm002536 Prunus mume Pm002536 I 0.677
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.677
MDP0000142580 Malus domestica MDP0000142580 I 0.677
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.676
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.674
Thhalv10017008m.g Eutrema salsugineum Thhalv10017008m.g I 0.673
PK27213.1 Cannabis sativa PK27213.1 D 0.671
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.670
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.666
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.666
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.666
29681.m001296 Ricinus communis 29681.m001296 I 0.664
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.662
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.661