Bo9g135730 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo9g135730 T267630_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.845 0.957
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.845 0.957
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.740 0.840
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.740 0.840
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.664 0.798
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g135730.1 Myb 140 187

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra002610 Brassica rapa Bra002610 I 0.869
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.847
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.845
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.845
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.845
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.845
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.845
Bo3g018460 Brassica oleracea Bo3g018460 I 0.808
Bra006741 Brassica rapa Bra006741 I 0.808
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.768
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.758
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.754
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.754
Cla013553 Citrullus lanatus Cla013553 I 0.745
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.741
PK27213.1 Cannabis sativa PK27213.1 D 0.740
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.739
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.734
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.719
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.719
mgf022442m Mimulus guttatus mgf022442m I 0.718
TCM_042604 Theobroma cacao TCM_042604 I 0.713
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.709
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.709
GLYMA02G39000 Glycine max GLYMA02G39000 I 0.708
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.708
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.704
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.701
Thhalv10014410m.g Eutrema salsugineum Thhalv10014410m.g I 0.700
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.697
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.697
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.696
TCM_041672 Theobroma cacao TCM_041672 I 0.695
PGSC0003DMG400030348 Solanum tuberosum PGSC0003DMG400030348 I 0.695
Solyc06g076770.2 Solanum lycopersicum Solyc06g076770.2 I 0.695
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I 0.693
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.692
29681.m001296 Ricinus communis 29681.m001296 I 0.690
Cla004397 Citrullus lanatus Cla004397 I 0.689
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.684
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.684
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.684
Bra009134 Brassica rapa Bra009134 I 0.682
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.679
29610.m000410 Ricinus communis 29610.m000410 I 0.679
MTR_3g462790 Medicago truncatula MTR_3g462790 I 0.679
Ca_14247 Cicer arietinum Ca_14247 I 0.677
Ca_15603 Cicer arietinum Ca_15603 I 0.676
MTR_5g069710 Medicago truncatula MTR_5g069710 I 0.676
VIT_06s0004g06100 Vitis vinifera VIT_06s0004g06100 I 0.676
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.674
Pm002536 Prunus mume Pm002536 I 0.674
MDP0000142580 Malus domestica MDP0000142580 I 0.674
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.674
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.674
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.673
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.673
MDP0000255630 Malus domestica MDP0000255630 I 0.670
Bostr.6251s0088 Boechera stricta Bostr.6251s0088 I 0.670
MDP0000292581 Malus domestica MDP0000292581 I 0.670
MDP0000243328 Malus domestica MDP0000243328 I 0.670
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.669
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.669
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.669
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.667
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.666
Bo9g176900 Brassica oleracea Bo9g176900 I 0.666
gene07984-v1.0-hybrid Fragaria vesca gene07984-v1.0-hybrid I 0.666
Bo4g029810 Brassica oleracea Bo4g029810 I 0.664
Bra005139 Brassica rapa Bra005139 I 0.664
Bo4g187390 Brassica oleracea Bo4g187390 I 0.664
Bra017138 Brassica rapa Bra017138 I 0.664
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.664
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.664
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.664
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.664
28288.m000014 Ricinus communis 28288.m000014 I 0.663
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.663
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.663
AT5G01200 Arabidopsis thaliana AT5G01200 N 0.662
GSMUA_Achr10G02290_001 Musa acuminata GSMUA_Achr10G02290_001 I 0.662