TCM_042604 (Theobroma cacao)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 TCM_042604 T280643_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G11280
M01075_2.00 		Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN		 PBM
Sullivan et al.(2014)
pTH7245 		0.816 0.904
AT3G11280
M07074_2.00 		Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH		 Dap-seq
OMalley et al.(2016)
At3g11280_col_a 		0.816 0.904
AT3G11280
M07075_2.00 		Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN		 Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a 		0.816 0.904
AT5G05790
M07119_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g05790_col_a 		0.796 0.894
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.683 0.819
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.670 0.777
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.670 0.777
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY17903 Myb 122 169

Links

Other Myb/SANT family TFs
Other Theobroma cacao TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.829
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.816
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.816
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.805
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.805
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.805
Bra034173 Brassica rapa Bra034173 I 0.800
Bo9g176900 Brassica oleracea Bo9g176900 I 0.800
Bra009134 Brassica rapa Bra009134 I 0.800
scaffold_600551.1 Arabidopsis lyrata scaffold_600551.1 I 0.796
AT5G05790 Arabidopsis thaliana AT5G05790 D 0.796
Bostr.13129s0394 Boechera stricta Bostr.13129s0394 I 0.796
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.790
Bo5g136680 Brassica oleracea Bo5g136680 I 0.789
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.789
Carubv10001695m.g Capsella rubella Carubv10001695m.g I 0.785
Cagra.5131s0007 Capsella grandiflora Cagra.5131s0007 I 0.785
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.783
Bo1g141120 Brassica oleracea Bo1g141120 I 0.783
Thhalv10014370m.g Eutrema salsugineum Thhalv10014370m.g I 0.780
Bra034853 Brassica rapa Bra034853 I 0.778
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.771
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.758
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.758
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.756
Ca_12513 Cicer arietinum Ca_12513 I 0.753
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.749
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.748
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.748
29610.m000410 Ricinus communis 29610.m000410 I 0.741
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.738
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.738
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.732
Cla004397 Citrullus lanatus Cla004397 I 0.732
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.730
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.726
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.719
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.719
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.718
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.717
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I 0.713
Bo9g135730 Brassica oleracea Bo9g135730 I 0.713
Eucgr.G03029 Eucalyptus grandis Eucgr.G03029 I 0.711
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.711
PK15104.1 Cannabis sativa PK15104.1 I 0.711
Pm018878 Prunus mume Pm018878 I 0.702
mgf010347m Mimulus guttatus mgf010347m I 0.702
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.702
Cla013553 Citrullus lanatus Cla013553 I 0.696
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.695
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.694
Bra002610 Brassica rapa Bra002610 I 0.694
MDP0000277813 Malus domestica MDP0000277813 I 0.688
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.688
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.688
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.687
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.687
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.686
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.686
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.685
PGSC0003DMG400020730 Solanum tuberosum PGSC0003DMG400020730 I 0.683
gene20912-v1.0-hybrid Fragaria vesca gene20912-v1.0-hybrid I 0.683
PK27693.1 Cannabis sativa PK27693.1 D 0.683
Bo3g018460 Brassica oleracea Bo3g018460 I 0.681
29681.m001296 Ricinus communis 29681.m001296 I 0.681
Bra006741 Brassica rapa Bra006741 I 0.681
Solyc03g096350.2 Solanum lycopersicum Solyc03g096350.2 I 0.681
TCM_041672 Theobroma cacao TCM_041672 I 0.679
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.673
TCM_021750 Theobroma cacao TCM_021750 I 0.672
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.672
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.671
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.670
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.670
MDP0000243328 Malus domestica MDP0000243328 I 0.670
MDP0000292581 Malus domestica MDP0000292581 I 0.670
MDP0000255630 Malus domestica MDP0000255630 I 0.670
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.670
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.670
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.670
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.670
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.668
Pm000529 Prunus mume Pm000529 I 0.668
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.666
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.666
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.666
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.666
MTR_3g462790 Medicago truncatula MTR_3g462790 I 0.665
Gorai.006G180900 Gossypium raimondii Gorai.006G180900 I 0.665
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.663
Bra005139 Brassica rapa Bra005139 I 0.663
Bo4g187390 Brassica oleracea Bo4g187390 I 0.663
Bra017138 Brassica rapa Bra017138 I 0.663
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.663
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.663
Bo4g029810 Brassica oleracea Bo4g029810 I 0.663
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.663
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.662
Solyc10g076820.1 Solanum lycopersicum Solyc10g076820.1 I 0.662
SapurV1A.0001s0790 Salix purpurea SapurV1A.0001s0790 I 0.662
Ca_19327 Cicer arietinum Ca_19327 I 0.662
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.662
PGSC0003DMG400019129 Solanum tuberosum PGSC0003DMG400019129 I 0.662
POPTR_0016s11980 Populus trichocarpa POPTR_0016s11980 I 0.661
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.661
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.661