MTR_5g081860 (Medicago truncatula)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 MTR_5g081860 T274882_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.735 0.817
AT3G11280
M01075_2.00 		Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN		 PBM
Sullivan et al.(2014)
pTH7245 		0.722 0.817
AT3G11280
M07074_2.00 		Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH		 Dap-seq
OMalley et al.(2016)
At3g11280_col_a 		0.722 0.817
AT3G11280
M07075_2.00 		Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN		 Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a 		0.722 0.817
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.714 0.817
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.689 0.753
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.689 0.753
AT5G05790
M07119_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g05790_col_a 		0.662 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES99526 Myb 124 171

Links

Other Myb/SANT family TFs
Other Medicago truncatula TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.877
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.867
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.867
Ca_12513 Cicer arietinum Ca_12513 I 0.864
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.833
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.783
29610.m000410 Ricinus communis 29610.m000410 I 0.762
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.759
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.757
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.757
Cla004397 Citrullus lanatus Cla004397 I 0.756
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.754
MDP0000221993 Malus domestica MDP0000221993 I 0.742
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.737
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.737
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.736
Bo3g032160 Brassica oleracea Bo3g032160 I 0.735
Bra000038 Brassica rapa Bra000038 I 0.735
Ca_19327 Cicer arietinum Ca_19327 I 0.735
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.735
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.735
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.735
Bo4g187390 Brassica oleracea Bo4g187390 I 0.735
Bo4g029810 Brassica oleracea Bo4g029810 I 0.735
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.735
Bra005139 Brassica rapa Bra005139 I 0.735
Bra017138 Brassica rapa Bra017138 I 0.735
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.734
SapurV1A.0001s0790 Salix purpurea SapurV1A.0001s0790 I 0.734
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.733
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.733
Bo5g136680 Brassica oleracea Bo5g136680 I 0.733
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.732
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.731
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.731
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.731
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.731
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.728
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.727
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.727
TCM_042604 Theobroma cacao TCM_042604 I 0.726
MDP0000142580 Malus domestica MDP0000142580 I 0.726
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I 0.724
Pm018878 Prunus mume Pm018878 I 0.724
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.724
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.724
Bra034173 Brassica rapa Bra034173 I 0.722
Bra034853 Brassica rapa Bra034853 I 0.722
POPTR_0016s11980 Populus trichocarpa POPTR_0016s11980 I 0.722
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.722
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.721
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.720
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.720
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.720
TCM_021750 Theobroma cacao TCM_021750 I 0.720
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.720
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.720
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.717
Pm002536 Prunus mume Pm002536 I 0.716
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.716
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.715
PK27693.1 Cannabis sativa PK27693.1 D 0.714
POPTR_0006s09860 Populus trichocarpa POPTR_0006s09860 I 0.713
fgenesh2_kg.4__1876__AT2G38090.1 Arabidopsis lyrata fgenesh2_kg.4__1876__AT2G38090.1 I 0.712
Thhalv10017008m.g Eutrema salsugineum Thhalv10017008m.g I 0.712
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.712
PGSC0003DMG400019129 Solanum tuberosum PGSC0003DMG400019129 I 0.712
Solyc10g076820.1 Solanum lycopersicum Solyc10g076820.1 I 0.712
29681.m001296 Ricinus communis 29681.m001296 I 0.711
28288.m000014 Ricinus communis 28288.m000014 I 0.711
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.711
cassava30173.valid.m1 Manihot esculenta cassava30173.valid.m1 I 0.711
PK15104.1 Cannabis sativa PK15104.1 I 0.709
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.709
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.709
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.708
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.707
Bo1g141120 Brassica oleracea Bo1g141120 I 0.705
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.704
VIT_08s0007g01920 Vitis vinifera VIT_08s0007g01920 I 0.703
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.702
GLYMA01G27720 Glycine max GLYMA01G27720 I 0.701
GLYMA03G14440 Glycine max GLYMA03G14440 I 0.701
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.701
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.700
TCM_041672 Theobroma cacao TCM_041672 I 0.699
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.694
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.694
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.693
GLYMA02G39000 Glycine max GLYMA02G39000 I 0.693
Bo9g176900 Brassica oleracea Bo9g176900 I 0.692
Solyc03g096350.2 Solanum lycopersicum Solyc03g096350.2 I 0.692
Bra009134 Brassica rapa Bra009134 I 0.692
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.691
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.691
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.690
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I 0.689
PK27213.1 Cannabis sativa PK27213.1 D 0.689
MDP0000277813 Malus domestica MDP0000277813 I 0.687
Gorai.006G180900 Gossypium raimondii Gorai.006G180900 I 0.679
GLYMA11G22960 Glycine max GLYMA11G22960 I 0.678
Cla013553 Citrullus lanatus Cla013553 I 0.674
Solyc09g014250.2 Solanum lycopersicum Solyc09g014250.2 I 0.674
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.674
PGSC0003DMG400020344 Solanum tuberosum PGSC0003DMG400020344 I 0.674
MTR_5g069710 Medicago truncatula MTR_5g069710 I 0.672
Ca_14247 Cicer arietinum Ca_14247 I 0.672
Ca_15603 Cicer arietinum Ca_15603 I 0.672
gene07984-v1.0-hybrid Fragaria vesca gene07984-v1.0-hybrid I 0.672
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.671
gene20912-v1.0-hybrid Fragaria vesca gene20912-v1.0-hybrid I 0.668
Thhalv10014370m.g Eutrema salsugineum Thhalv10014370m.g I 0.668
MTR_3g462790 Medicago truncatula MTR_3g462790 I 0.667
cassava23290.valid.m1 Manihot esculenta cassava23290.valid.m1 I 0.662
Pm000529 Prunus mume Pm000529 I 0.662
scaffold_600551.1 Arabidopsis lyrata scaffold_600551.1 I 0.662
Bostr.13129s0394 Boechera stricta Bostr.13129s0394 I 0.662
Cagra.5131s0007 Capsella grandiflora Cagra.5131s0007 I 0.662
AT5G05790 Arabidopsis thaliana AT5G05790 D 0.662
Carubv10001695m.g Capsella rubella Carubv10001695m.g I 0.662
GSMUA_Achr10G00660_001 Musa acuminata GSMUA_Achr10G00660_001 I 0.662