AT5G05790 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G05790 T266518_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05790
M07119_2.00		 Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g05790_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G11280
M01075_2.00 		Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN		 PBM
Sullivan et al.(2014)
pTH7245 		0.751 0.915
AT3G11280
M07074_2.00 		Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH		 Dap-seq
OMalley et al.(2016)
At3g11280_col_a 		0.751 0.915
AT3G11280
M07075_2.00 		Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN		 Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a 		0.751 0.915
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.687 0.766
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.687 0.766
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G05790.1 Myb 130 177
AT5G05790.2 Myb 130 177

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_600551.1 Arabidopsis lyrata scaffold_600551.1 I 0.909
Bostr.13129s0394 Boechera stricta Bostr.13129s0394 I 0.909
Cagra.5131s0007 Capsella grandiflora Cagra.5131s0007 I 0.898
Carubv10001695m.g Capsella rubella Carubv10001695m.g I 0.898
Thhalv10014370m.g Eutrema salsugineum Thhalv10014370m.g I 0.882
Bra009134 Brassica rapa Bra009134 I 0.842
Bo9g176900 Brassica oleracea Bo9g176900 I 0.842
TCM_042604 Theobroma cacao TCM_042604 I 0.796
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.751
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.751
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.751
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.751
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.751
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.740
Bra034173 Brassica rapa Bra034173 I 0.736
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.725
Bra034853 Brassica rapa Bra034853 I 0.725
Bo1g141120 Brassica oleracea Bo1g141120 I 0.719
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.713
Bo5g136680 Brassica oleracea Bo5g136680 I 0.713
Bra002610 Brassica rapa Bra002610 I 0.698
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.694
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.693
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.693
Ca_12513 Cicer arietinum Ca_12513 I 0.689
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.687
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.687
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.687
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.687
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.687
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.682
Pm018878 Prunus mume Pm018878 I 0.680
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.680
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.677
Bra006741 Brassica rapa Bra006741 I 0.677
Bo3g018460 Brassica oleracea Bo3g018460 I 0.677
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.677
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.674
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.674
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.672
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.672
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.671
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.671
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.669
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.669
mgf010347m Mimulus guttatus mgf010347m I 0.666
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.662