Carubv10026903m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10026903m.g T286457_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.898 0.979
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.898 0.979
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.756 0.840
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.756 0.840
AT5G05790
M07119_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g05790_col_a 		0.687 0.766
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.672 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026903m Myb 140 187

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.909
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.898
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.898
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.898
Bra002610 Brassica rapa Bra002610 I 0.885
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.874
Bo3g018460 Brassica oleracea Bo3g018460 I 0.861
Bra006741 Brassica rapa Bra006741 I 0.861
Bo9g135730 Brassica oleracea Bo9g135730 I 0.845
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.781
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.781
PK27213.1 Cannabis sativa PK27213.1 D 0.756
mgf022442m Mimulus guttatus mgf022442m I 0.745
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.736
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.736
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.736
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.729
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.725
GLYMA02G39000 Glycine max GLYMA02G39000 I 0.725
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.725
TCM_041672 Theobroma cacao TCM_041672 I 0.724
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.720
29681.m001296 Ricinus communis 29681.m001296 I 0.718
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.714
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.713
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.706
Eucgr.J01940 Eucalyptus grandis Eucgr.J01940 I 0.704
MTR_5g069710 Medicago truncatula MTR_5g069710 I 0.703
Cla013553 Citrullus lanatus Cla013553 I 0.701
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.701
Carubv10001695m.g Capsella rubella Carubv10001695m.g I 0.698
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.698
Cagra.5131s0007 Capsella grandiflora Cagra.5131s0007 I 0.698
Thhalv10014410m.g Eutrema salsugineum Thhalv10014410m.g I 0.697
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.695
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.695
MTR_3g462790 Medicago truncatula MTR_3g462790 I 0.695
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.694
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.694
Ca_15603 Cicer arietinum Ca_15603 I 0.693
Ca_14247 Cicer arietinum Ca_14247 I 0.693
VIT_06s0004g06100 Vitis vinifera VIT_06s0004g06100 I 0.693
scaffold_600551.1 Arabidopsis lyrata scaffold_600551.1 I 0.687
AT5G05790 Arabidopsis thaliana AT5G05790 D 0.687
Bostr.13129s0394 Boechera stricta Bostr.13129s0394 I 0.687
MDP0000255630 Malus domestica MDP0000255630 I 0.686
MDP0000292581 Malus domestica MDP0000292581 I 0.686
MDP0000243328 Malus domestica MDP0000243328 I 0.686
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.682
Pm002536 Prunus mume Pm002536 I 0.682
Solyc06g076770.2 Solanum lycopersicum Solyc06g076770.2 I 0.681
PGSC0003DMG400030348 Solanum tuberosum PGSC0003DMG400030348 I 0.681
Pavir.J16113 Panicum virgatum Pavir.J16113 I 0.680
GLYMA18G07250 Glycine max GLYMA18G07250 I 0.678
GLYMA03G14440 Glycine max GLYMA03G14440 I 0.678
GLYMA01G27720 Glycine max GLYMA01G27720 I 0.678
VIT_08s0007g01920 Vitis vinifera VIT_08s0007g01920 I 0.678
GLYMA11G22960 Glycine max GLYMA11G22960 I 0.678
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.677
Bo2g002350 Brassica oleracea Bo2g002350 I 0.673
Bra028892 Brassica rapa Bra028892 I 0.673
Bo4g029810 Brassica oleracea Bo4g029810 I 0.672
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.672
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.672
Thhalv10014370m.g Eutrema salsugineum Thhalv10014370m.g I 0.672
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.672
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.672
28288.m000014 Ricinus communis 28288.m000014 I 0.672
MDP0000142580 Malus domestica MDP0000142580 I 0.671
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.671
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.671
TCM_042604 Theobroma cacao TCM_042604 I 0.670
cassava23290.valid.m1 Manihot esculenta cassava23290.valid.m1 I 0.668
Bostr.6251s0088 Boechera stricta Bostr.6251s0088 I 0.668
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.667
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.667
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.666
TCM_021750 Theobroma cacao TCM_021750 I 0.665
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.665
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.664
PRUPE_ppa009072mg Prunus persica PRUPE_ppa009072mg I 0.663
Pm000529 Prunus mume Pm000529 I 0.663
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.663
cassava30173.valid.m1 Manihot esculenta cassava30173.valid.m1 I 0.663
Bra009134 Brassica rapa Bra009134 I 0.662
Bra005139 Brassica rapa Bra005139 I 0.661
Bo4g187390 Brassica oleracea Bo4g187390 I 0.661
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.661
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.661
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.661
Bra017138 Brassica rapa Bra017138 I 0.661