Pavir.J16113 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J16113 T289385_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.691 0.785
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.691 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J16113.1.p Myb 38 86
Pavir.J16113.1.p Myb 142 189

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ea03421 Panicum virgatum Pavir.Ea03421 N 0.855
Si002423m.g Setaria italica Si002423m.g N 0.775
GLYMA18G07250 Glycine max GLYMA18G07250 I 0.721
GRMZM2G125522 Zea mays GRMZM2G125522 N 0.703
GRMZM2G056986 Zea mays GRMZM2G056986 N 0.698
MTR_3g462790 Medicago truncatula MTR_3g462790 I 0.695
Ca_15603 Cicer arietinum Ca_15603 I 0.692
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.691
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.691
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.691
OPUNC01G36480 Oryza punctata OPUNC01G36480 N 0.691
OB01G46330 Oryza brachyantha OB01G46330 N 0.687
LPERR01G32290 Leersia perrieri LPERR01G32290 N 0.687
Sb03g040160 Sorghum bicolor Sb03g040160 N 0.685
GLYMA02G39000 Glycine max GLYMA02G39000 I 0.681
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.681
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.680
Cla018243 Citrullus lanatus Cla018243 I 0.680
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.680
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.678
MDP0000142580 Malus domestica MDP0000142580 I 0.677
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.677
GLYMA11G22960 Glycine max GLYMA11G22960 I 0.677
MDP0000221993 Malus domestica MDP0000221993 I 0.676
MDP0000255630 Malus domestica MDP0000255630 I 0.675
MDP0000292581 Malus domestica MDP0000292581 I 0.675
MDP0000243328 Malus domestica MDP0000243328 I 0.675
VIT_06s0004g06100 Vitis vinifera VIT_06s0004g06100 I 0.675
Bo3g018460 Brassica oleracea Bo3g018460 I 0.674
Bra006741 Brassica rapa Bra006741 I 0.674
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.672
Eucgr.J01940 Eucalyptus grandis Eucgr.J01940 I 0.672
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.672
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I 0.671
Bra002610 Brassica rapa Bra002610 I 0.668
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.667
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.667
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.667
VIT_08s0007g01920 Vitis vinifera VIT_08s0007g01920 I 0.662
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.662
MTR_5g069710 Medicago truncatula MTR_5g069710 I 0.661