CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.25796s0001
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.25796s0001
T286098_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SRM1
M02307_2.00
Arabidopsis thaliana
NNHNATCNN
NNGATNDNN
PBM
Weirauch et al.(2014)
pTH7080
0.677
0.750
SRM1
M07121_2.00
Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a
0.677
0.750
SRM1
M07122_2.00
Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_col_b
0.677
0.750
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.25796s0001.1.p
Myb
10
59
GSSWSRDEDIAFERALAIYADENENRWEKIALVVPGKTKEQIIERYNVLV
Cagra.25796s0001.1.p
Myb
118
163
PWTSTEHRQFLLGLEKFGKGDWRSISRHFVLTRTSTQVASHAQKYY
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10003231m.g
Capsella rubella
Carubv10003231m.g
I
0.907
Al_scaffold_0006_2242
Arabidopsis lyrata
Al_scaffold_0006_2242
N
0.798
Cagra.4850s0001
Capsella grandiflora
Cagra.4850s0001
N
0.790
Carubv10027693m.g
Capsella rubella
Carubv10027693m.g
N
0.783
AT5G23650
Arabidopsis thaliana
AT5G23650
N
0.770
Bostr.10199s0068
Boechera stricta
Bostr.10199s0068
I
0.730
Bra009699
Brassica rapa
Bra009699
I
0.716
Bo7g097510
Brassica oleracea
Bo7g097510
I
0.707
Thhalv10005383m.g
Eutrema salsugineum
Thhalv10005383m.g
I
0.702
Bo2g160810
Brassica oleracea
Bo2g160810
N
0.692
Bostr.13129s0103
Boechera stricta
Bostr.13129s0103
I
0.688
Bra029380
Brassica rapa
Bra029380
N
0.685
SRM1
Arabidopsis thaliana
AT5G08520
D
0.677
Thhalv10014203m.g
Eutrema salsugineum
Thhalv10014203m.g
I
0.677
fgenesh2_kg.6__825__AT5G08520.1
Arabidopsis lyrata
fgenesh2_kg.6__825__AT5G08520.1
I
0.672
Carubv10001525m.g
Capsella rubella
Carubv10001525m.g
I
0.666
Cagra.1365s0066
Capsella grandiflora
Cagra.1365s0066
I
0.666