CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.008G158000
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.008G158000
T287676_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.688
0.817
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.688
0.817
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.008G158000.1
Myb
13
54
KGPWTTEEDTLLTRYIGRHGVGPWNMLAKCAGTNTLINNLFT
Gorai.008G158000.1
Myb
61
85
VDLPLTSSGLKRSGKSCRLRWLNYL
Gorai.008G158000.1
Myb
91
136
RGNLTLQEQQLILQLHSLWGNRWSKIAEHLPGRTDNEIKNYWRTRV
Gorai.008G158000.2
Myb
13
60
KGPWTTEEDTLLTRYIGRHGVGPWNMLAKCAGLKRSGKSCRLRWLNYL
Gorai.008G158000.2
Myb
66
111
RGNLTLQEQQLILQLHSLWGNRWSKIAEHLPGRTDNEIKNYWRTRV
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
198 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_009642
Theobroma cacao
TCM_009642
I
0.727
Gorai.002G218600
Gossypium raimondii
Gorai.002G218600
I
0.727
evm.TU.supercontig_798.1
Carica papaya
evm.TU.supercontig_798.1
I
0.727
Lus10041435.g
Linum usitatissimum
Lus10041435.g
I
0.724
Lus10034338.g
Linum usitatissimum
Lus10034338.g
I
0.719
ATMYB2
Vitis vinifera
VIT_07s0005g01950
I
0.718
POPTR_0010s13290
Populus trichocarpa
POPTR_0010s13290
I
0.714
SapurV1A.0078s0260
Salix purpurea
SapurV1A.0078s0260
I
0.714
POPTR_0012s05200
Populus trichocarpa
POPTR_0012s05200
I
0.710
POPTR_0015s03770
Populus trichocarpa
POPTR_0015s03770
I
0.710
SapurV1A.0989s0120
Salix purpurea
SapurV1A.0989s0120
I
0.710
SapurV1A.2885s0020
Salix purpurea
SapurV1A.2885s0020
I
0.710
SapurV1A.1621s0010
Salix purpurea
SapurV1A.1621s0010
I
0.710
SapurV1A.0530s0020
Salix purpurea
SapurV1A.0530s0020
I
0.710
GLYMA20G25110
Glycine max
GLYMA20G25110
I
0.706
MTR_1g110460
Medicago truncatula
MTR_1g110460
I
0.706
LjT44F11.120.nd
Lotus japonicus
LjT44F11.120.nd
I
0.706
gene03712-v1.0-hybrid
Fragaria vesca
gene03712-v1.0-hybrid
I
0.705
SapurV1A.0294s0070
Salix purpurea
SapurV1A.0294s0070
I
0.703
Cucsa.213510
Cucumis sativus
Cucsa.213510
I
0.702
TCM_012363
Theobroma cacao
TCM_012363
I
0.701
POPTR_0008s12130
Populus trichocarpa
POPTR_0008s12130
I
0.701
POPTR_0002s19250
Populus trichocarpa
POPTR_0002s19250
I
0.700
POPTR_0014s11230
Populus trichocarpa
POPTR_0014s11230
I
0.700
GLYMA03G38040
Glycine max
GLYMA03G38040
I
0.699
PRUPE_ppa008877mg
Prunus persica
PRUPE_ppa008877mg
I
0.696
Pm025177
Prunus mume
Pm025177
I
0.696
PK22268.1
Cannabis sativa
PK22268.1
I
0.696
GLYMA10G41930
Glycine max
GLYMA10G41930
I
0.696
Gorai.006G060300
Gossypium raimondii
Gorai.006G060300
I
0.695
VIT_01s0011g03730
Vitis vinifera
VIT_01s0011g03730
I
0.694
GRMZM2G176327
Zea mays
GRMZM2G176327
N
0.693
GSMUA_Achr3G21060_001
Musa acuminata
GSMUA_Achr3G21060_001
I
0.690
evm.TU.supercontig_49.71
Carica papaya
evm.TU.supercontig_49.71
I
0.690
GSMUA_Achr8G18460_001
Musa acuminata
GSMUA_Achr8G18460_001
I
0.689
Ca_03536
Cicer arietinum
Ca_03536
I
0.689
MYB62
Arabidopsis thaliana
AT1G68320
D
0.688
orange1.1g021188m.g
Citrus sinensis
orange1.1g021188m.g
I
0.688
Bo2g057760
Brassica oleracea
Bo2g057760
I
0.688
Ciclev10015986m.g
Citrus clementina
Ciclev10015986m.g
I
0.688
Bo6g106730
Brassica oleracea
Bo6g106730
I
0.688
Thhalv10018962m.g
Eutrema salsugineum
Thhalv10018962m.g
I
0.688
Bra033948
Brassica rapa
Bra033948
I
0.688
Bra004297
Brassica rapa
Bra004297
I
0.688
MYB62
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001171
I
0.688
Ca_03535
Cicer arietinum
Ca_03535
I
0.687
MDP0000259898
Malus domestica
MDP0000259898
I
0.687
MDP0000934638
Malus domestica
MDP0000934638
I
0.687
Ciclev10021157m.g
Citrus clementina
Ciclev10021157m.g
I
0.686
orange1.1g020603m.g
Citrus sinensis
orange1.1g020603m.g
I
0.686
Bo7g050560
Brassica oleracea
Bo7g050560
I
0.685
Bra012482
Brassica rapa
Bra012482
I
0.685
PK13281.1
Cannabis sativa
PK13281.1
I
0.685
PGSC0003DMG400014550
Solanum tuberosum
PGSC0003DMG400014550
I
0.685
Solyc05g009230.1
Solanum lycopersicum
Solyc05g009230.1
I
0.685
evm.TU.supercontig_145.21
Carica papaya
evm.TU.supercontig_145.21
I
0.684
VIT_17s0000g03560
Vitis vinifera
VIT_17s0000g03560
I
0.684
Lus10000470.g
Linum usitatissimum
Lus10000470.g
I
0.684
SapurV1A.0014s0140
Salix purpurea
SapurV1A.0014s0140
I
0.683
OS07G0688200
Oryza sativa
OS07G0688200
I
0.681
ORUFI07G27930
Oryza rufipogon
ORUFI07G27930
I
0.681
ORGLA07G0213800
Oryza glaberrima
ORGLA07G0213800
I
0.681
BGIOSGA026430
Oryza indica
BGIOSGA026430
I
0.681
OBART07G26990
Oryza barthii
OBART07G26990
I
0.681
OB07G32480
Oryza brachyantha
OB07G32480
I
0.681
OGLUM07G26960
Oryza glumaepatula
OGLUM07G26960
I
0.681
OMERI07G23590
Oryza meridionalis
OMERI07G23590
I
0.681
ONIVA07G26740
Oryza nivara
ONIVA07G26740
I
0.681
AMTR_s00079p00140660
Amborella trichopoda
AMTR_s00079p00140660
I
0.681
OPUNC07G25360
Oryza punctata
OPUNC07G25360
I
0.681
evm.TU.supercontig_3.502
Carica papaya
evm.TU.supercontig_3.502
I
0.680
MTR_1g086510
Medicago truncatula
MTR_1g086510
I
0.680
GLYMA10G01330
Glycine max
GLYMA10G01330
I
0.680
evm.TU.supercontig_3.501
Carica papaya
evm.TU.supercontig_3.501
I
0.680
Cla008412
Citrullus lanatus
Cla008412
I
0.680
SapurV1A.0079s0020
Salix purpurea
SapurV1A.0079s0020
I
0.680
Bra004041
Brassica rapa
Bra004041
I
0.679
Bo6g097180
Brassica oleracea
Bo6g097180
I
0.679
Cla017610
Citrullus lanatus
Cla017610
I
0.679
Cucsa.365190
Cucumis sativus
Cucsa.365190
I
0.679
Carubv10021411m.g
Capsella rubella
Carubv10021411m.g
I
0.678
Cagra.1111s0025
Capsella grandiflora
Cagra.1111s0025
I
0.678
Solyc08g008480.2
Solanum lycopersicum
Solyc08g008480.2
I
0.677
GSMUA_Achr2G22640_001
Musa acuminata
GSMUA_Achr2G22640_001
I
0.677
Ca_05503
Cicer arietinum
Ca_05503
I
0.676
Sb03g007360
Sorghum bicolor
Sb03g007360
I
0.676
Si030584m.g
Setaria italica
Si030584m.g
I
0.676
OMERI01G01310
Oryza meridionalis
OMERI01G01310
I
0.676
Pavir.Ea00660
Panicum virgatum
Pavir.Ea00660
I
0.676
LPERR01G01750
Leersia perrieri
LPERR01G01750
I
0.676
OB01G11750
Oryza brachyantha
OB01G11750
I
0.676
OBART01G01830
Oryza barthii
OBART01G01830
I
0.676
Pavir.Eb00654
Panicum virgatum
Pavir.Eb00654
I
0.676
GSMUA_Achr3G01370_001
Musa acuminata
GSMUA_Achr3G01370_001
I
0.676
BGIOSGA002469
Oryza indica
BGIOSGA002469
I
0.676
GRMZM2G096358
Zea mays
GRMZM2G096358
I
0.676
GRMZM2G162709
Zea mays
GRMZM2G162709
I
0.676
OLONG_008024
Oryza longistaminata
OLONG_008024
I
0.676
OGLUM01G02010
Oryza glumaepatula
OGLUM01G02010
I
0.676
OS01G0128000
Oryza sativa
OS01G0128000
I
0.676
ONIVA01G01990
Oryza nivara
ONIVA01G01990
I
0.676
Gorai.008G287100
Gossypium raimondii
Gorai.008G287100
I
0.676
ORUFI01G01910
Oryza rufipogon
ORUFI01G01910
I
0.676
ORGLA01G0016500
Oryza glaberrima
ORGLA01G0016500
I
0.676
cassava46139.m1
Manihot esculenta
cassava46139.m1
I
0.675
GLYMA19G40650
Glycine max
GLYMA19G40650
I
0.675
evm.TU.contig_30289.2
Carica papaya
evm.TU.contig_30289.2
I
0.674
PK21537.1
Cannabis sativa
PK21537.1
I
0.674
Gorai.005G068900
Gossypium raimondii
Gorai.005G068900
I
0.674
Gorai.011G203900
Gossypium raimondii
Gorai.011G203900
I
0.674
gene05018-v1.0-hybrid
Fragaria vesca
gene05018-v1.0-hybrid
I
0.674
mgf015990m
Mimulus guttatus
mgf015990m
I
0.674
MDP0000274300
Malus domestica
MDP0000274300
I
0.674
Aquca_003_00440
Aquilegia coerulea
Aquca_003_00440
I
0.674
Solyc01g057910.2
Solanum lycopersicum
Solyc01g057910.2
I
0.674
VIT_05s0077g00500
Vitis vinifera
VIT_05s0077g00500
I
0.674
PGSC0003DMG400005848
Solanum tuberosum
PGSC0003DMG400005848
I
0.674
GSMUA_Achr6G09760_001
Musa acuminata
GSMUA_Achr6G09760_001
I
0.674
PRUPE_ppa025672mg
Prunus persica
PRUPE_ppa025672mg
I
0.674
PGSC0003DMG400008761
Solanum tuberosum
PGSC0003DMG400008761
I
0.674
Bostr.26959s0063
Boechera stricta
Bostr.26959s0063
I
0.673
MTR_1g086530
Medicago truncatula
MTR_1g086530
I
0.673
MYB2
Oryza sativa
OS03G0315400
I
0.672
Sb09g002675
Sorghum bicolor
Sb09g002675
I
0.672
Sb09g002680
Sorghum bicolor
Sb09g002680
I
0.672
BGIOSGA010857
Oryza indica
BGIOSGA010857
I
0.672
ORGLA03G0145100
Oryza glaberrima
ORGLA03G0145100
I
0.672
OB03G25040
Oryza brachyantha
OB03G25040
I
0.672
Pavir.J03771
Panicum virgatum
Pavir.J03771
I
0.672
Pavir.Ca00769
Panicum virgatum
Pavir.Ca00769
I
0.672
LPERR03G13320
Leersia perrieri
LPERR03G13320
I
0.672
Si022474m.g
Setaria italica
Si022474m.g
I
0.672
GRMZM2G425427
Zea mays
GRMZM2G425427
I
0.672
gene25149-v1.0-hybrid
Fragaria vesca
gene25149-v1.0-hybrid
I
0.672
Solyc08g082890.2
Solanum lycopersicum
Solyc08g082890.2
I
0.671
MDP0000167107
Malus domestica
MDP0000167107
I
0.671
Pm012912
Prunus mume
Pm012912
I
0.671
PRUPE_ppa015973mg
Prunus persica
PRUPE_ppa015973mg
I
0.671
PGSC0003DMG400012126
Solanum tuberosum
PGSC0003DMG400012126
I
0.671
cassava12704.valid.m1
Manihot esculenta
cassava12704.valid.m1
I
0.671
Cla015409
Citrullus lanatus
Cla015409
I
0.671
Traes_3DS_A0676BAEA
Triticum aestivum
Traes_3DS_A0676BAEA
I
0.671
Pm029082
Prunus mume
Pm029082
I
0.670
cassava28986.valid.m1
Manihot esculenta
cassava28986.valid.m1
I
0.670
PRUPE_ppa009143mg
Prunus persica
PRUPE_ppa009143mg
I
0.670
mgf013798m
Mimulus guttatus
mgf013798m
I
0.669
F775_25534
Aegilops tauschii
F775_25534
I
0.669
PGSC0003DMG401004611
Solanum tuberosum
PGSC0003DMG401004611
I
0.669
mgf015598m
Mimulus guttatus
mgf015598m
I
0.668
PGSC0003DMG400005641
Solanum tuberosum
PGSC0003DMG400005641
I
0.667
OGLUM05G02350
Oryza glumaepatula
OGLUM05G02350
I
0.667
GRMZM2G330475
Zea mays
GRMZM2G330475
I
0.667
BGIOSGA018863
Oryza indica
BGIOSGA018863
I
0.667
GSMUA_Achr11G16130_001
Musa acuminata
GSMUA_Achr11G16130_001
I
0.667
OB05G12230
Oryza brachyantha
OB05G12230
I
0.667
ORGLA05G0022200
Oryza glaberrima
ORGLA05G0022200
I
0.667
ONIVA05G02220
Oryza nivara
ONIVA05G02220
I
0.667
ORUFI05G02420
Oryza rufipogon
ORUFI05G02420
I
0.667
OPUNC05G02190
Oryza punctata
OPUNC05G02190
I
0.667
Solyc03g119370.1
Solanum lycopersicum
Solyc03g119370.1
I
0.667
Aquca_041_00011
Aquilegia coerulea
Aquca_041_00011
I
0.666
TRIUR3_13477
Triticum urartu
TRIUR3_13477
N
0.666
cassava39393.m1
Manihot esculenta
cassava39393.m1
I
0.665
mgf006108m
Mimulus guttatus
mgf006108m
I
0.665
cassava33046.m1
Manihot esculenta
cassava33046.m1
I
0.665
SapurV1A.0035s0040
Salix purpurea
SapurV1A.0035s0040
I
0.665
Bostr.12659s0423
Boechera stricta
Bostr.12659s0423
I
0.665
Bostr.15774s0093
Boechera stricta
Bostr.15774s0093
I
0.665
Cagra.3474s0016
Capsella grandiflora
Cagra.3474s0016
I
0.665
Cucsa.252400
Cucumis sativus
Cucsa.252400
I
0.665
Sb02g043420
Sorghum bicolor
Sb02g043420
I
0.665
Gorai.006G265800
Gossypium raimondii
Gorai.006G265800
I
0.665
TCM_021433
Theobroma cacao
TCM_021433
I
0.665
Cla022143
Citrullus lanatus
Cla022143
I
0.665
Bo7g092890
Brassica oleracea
Bo7g092890
I
0.665
Carubv10026871m.g
Capsella rubella
Carubv10026871m.g
I
0.665
Bra010022
Brassica rapa
Bra010022
I
0.665
Thhalv10004588m.g
Eutrema salsugineum
Thhalv10004588m.g
I
0.665
Bra010021
Brassica rapa
Bra010021
I
0.665
MYB78
Arabidopsis lyrata
fgenesh2_kg.8__837__AT5G49620.1
I
0.665
Cucsa.340790
Cucumis sativus
Cucsa.340790
N
0.664
Aquca_030_00246
Aquilegia coerulea
Aquca_030_00246
N
0.663
GSMUA_AchrUn_randomG27010_001
Musa acuminata
GSMUA_AchrUn_randomG27010_001
I
0.663
PRUPE_ppa023812mg
Prunus persica
PRUPE_ppa023812mg
I
0.663
GRMZM2G001824
Zea mays
GRMZM2G001824
I
0.663
30076.m004607
Ricinus communis
30076.m004607
I
0.663
GSMUA_AchrUn_randomG00010_001
Musa acuminata
GSMUA_AchrUn_randomG00010_001
I
0.662
Lus10009037.g
Linum usitatissimum
Lus10009037.g
I
0.662
Solyc12g099130.1
Solanum lycopersicum
Solyc12g099130.1
I
0.662
Lus10032129.g
Linum usitatissimum
Lus10032129.g
I
0.662
Lus10014557.g
Linum usitatissimum
Lus10014557.g
I
0.662
Cagra.2231s0026
Capsella grandiflora
Cagra.2231s0026
I
0.662
Si035722m.g
Setaria italica
Si035722m.g
I
0.661
Sb01g037110
Sorghum bicolor
Sb01g037110
I
0.661
Bo5g043390
Brassica oleracea
Bo5g043390
I
0.661
Pavir.J39490
Panicum virgatum
Pavir.J39490
I
0.661
GSMUA_Achr10G19840_001
Musa acuminata
GSMUA_Achr10G19840_001
I
0.661
Pavir.J28445
Panicum virgatum
Pavir.J28445
I
0.661