CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.010G110000
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.010G110000
T287743_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.835
0.914
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.800
0.856
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.800
0.856
MYB3R4
M07125_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R4_col_a
0.787
0.849
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN
NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.779
0.878
Q948S4_TOBAC
M11073_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBB_01
0.706
0.748
Q948S6_TOBAC
M11075_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA1_01
0.664
0.791
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.010G110000.1
Myb
39
85
KGQWTAEEDDILSKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVL
Gorai.010G110000.1
Myb
91
138
KGPWSKEQEDELIIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHL
Gorai.010G110000.1
Myb
144
188
REAWTQEEELALVRAHQIFGNRWAELTKFLPGRTDNAIKNHWNSS
Gorai.010G110000.2
Myb
39
85
KGQWTAEEDDILSKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVL
Gorai.010G110000.2
Myb
91
137
KGPWSKEEDELIIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHL
Gorai.010G110000.2
Myb
143
187
REAWTQEEELALVRAHQIFGNRWAELTKFLPGRTDNAIKNHWNSS
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
142 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy