CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g009402m.g
(
Citrus sinensis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
orange1.1g009402m.g
T288771_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB3R5
M07116_2.00
Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN
Dap-seq
OMalley et al.(2016)
MYB3R5_col_a
0.781
0.886
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN
NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.698
0.786
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.693
0.743
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.693
0.743
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.675
0.764
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g009391m
Myb
60
106
KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVL
orange1.1g009391m
Myb
112
158
KGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHL
orange1.1g009391m
Myb
164
209
KDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSL
orange1.1g009402m
Myb
60
106
KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVL
orange1.1g009402m
Myb
112
158
KGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHL
orange1.1g009402m
Myb
164
209
KDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSL
orange1.1g009430m
Myb
60
106
KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVL
orange1.1g009430m
Myb
112
158
KGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHL
orange1.1g009430m
Myb
164
209
KDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSL
orange1.1g009439m
Myb
60
106
KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVL
orange1.1g009439m
Myb
112
158
KGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHL
orange1.1g009439m
Myb
164
209
KDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSL
Links
Other
Myb/SANT
family TFs
Other
Citrus sinensis
TFs
151 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy