CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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e_gw1.279.28.1
(
Physcomitrella patens
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
e_gw1.279.28.1
T297038_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
e_gw1.279.28.1
M02380_2.00
Physcomitrella patens
NNNTTGHKTDY
RHAMDCAANNN
PBM
Weirauch et al.(2014)
pTH8466
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
e_gw1.327.11.1
M02382_2.00
Physcomitrella patens
NTTDYRTWWN
NWWAYRHAAN
PBM
Weirauch et al.(2014)
pTH8478
0.906
0.798
e_gw1.288.15.1
M02381_2.00
Physcomitrella patens
NNNBAMKNHW
WDNMKTVNNN
PBM
Weirauch et al.(2014)
pTH8467
0.872
0.781
For this family, TFs with SR scores >
0.870
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02380_2.00
NAC/NAM
10
136
PPGFRFHPTDDELVSFYLVRKISNPQVVVKTIPNVDLNKCEPWDLPDKAKVGEKEWYFFSLRDRKYPTGQRTNRATDKGYWKATGKDRDVMNSGTHCLVGMKKTLVFYMGRAPKGLKTNWIMHEYRL
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.279.28.1
NAC/NAM
10
136
PPGFRFHPTDDELVSFYLVRKISNPQVVVKTIPNVDLNKCEPWDLPDKAKVGEKEWYFFSLRDRKYPTGQRTNRATDKGYWKATGKDRDVMNSGTHCLVGMKKTLVFYMGRAPKGLKTNWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Physcomitrella patens
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
e_gw1.259.32.1
Physcomitrella patens
e_gw1.259.32.1
I
0.939
e_gw1.327.11.1
Physcomitrella patens
e_gw1.327.11.1
D
0.906
e_gw1.164.23.1
Physcomitrella patens
e_gw1.164.23.1
I
0.889
e_gw1.288.15.1
Physcomitrella patens
e_gw1.288.15.1
D
0.872