CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_26.135
(
Carica papaya
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
evm.TU.supercontig_26.135
T297858_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac028
M01289_2.00
Arabidopsis thaliana
NTTGCGTRH
DYACGCAAN
PBM
Lambert et al.(2019)
pTH9962
0.888
0.684
anac028
M07179_2.00
Arabidopsis thaliana
CTTSHNNHDCAMGYWA
TWRCKTGHDNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC028_col_a
0.888
0.684
ANAC13
M07170_2.00
Arabidopsis thaliana
TDNCTTGYYNNNCAAG
CTTGNNNRRCAAGNHA
Dap-seq
OMalley et al.(2016)
ANAC013_col_a
0.878
0.754
ANAC13
M07171_2.00
Arabidopsis thaliana
CTTGYBHNNCAAGNHAH
DTDNCTTGNNDVRCAAG
Dap-seq
OMalley et al.(2016)
ANAC013_colamp_a
0.878
0.754
ANAC13
M11077_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANAC013_Q2
0.878
0.754
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_26.135
NAC/NAM
17
143
PPGFRFHPTDEELVLYYLKRKICKKRLKLDIIGETDVYKWDPEELPGQSILKTGDRQWFFFSPRDRKYPNGGRSNRATRNGYWKATGKDRNVMCNSRSAGVKKTLVFYRGRAPNGARTDWVMHEYTM
Links
Other
NAC/NAM
family TFs
Other
Carica papaya
TFs
47 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10000612m.g
Citrus clementina
Ciclev10000612m.g
I
0.966
MDP0000852271
Malus domestica
MDP0000852271
I
0.958
Pm022358
Prunus mume
Pm022358
N
0.956
gene27539-v1.0-hybrid
Fragaria vesca
gene27539-v1.0-hybrid
N
0.956
PRUPE_ppa003410mg
Prunus persica
PRUPE_ppa003410mg
N
0.956
GLYMA20G31210
Glycine max
GLYMA20G31210
N
0.954
GLYMA10G36360
Glycine max
GLYMA10G36360
N
0.954
Lus10028713.g
Linum usitatissimum
Lus10028713.g
I
0.950
Ca_04337
Cicer arietinum
Ca_04337
N
0.949
Gorai.005G076200
Gossypium raimondii
Gorai.005G076200
I
0.946
SapurV1A.0134s0420
Salix purpurea
SapurV1A.0134s0420
I
0.945
POPTR_0002s06210
Populus trichocarpa
POPTR_0002s06210
I
0.944
VIT_18s0001g01820
Vitis vinifera
VIT_18s0001g01820
I
0.944
Gorai.009G260000
Gossypium raimondii
Gorai.009G260000
I
0.943
cassava22173.valid.m1
Manihot esculenta
cassava22173.valid.m1
I
0.943
Eucgr.F02771
Eucalyptus grandis
Eucgr.F02771
N
0.942
MTR_1g097300
Medicago truncatula
MTR_1g097300
N
0.942
TCM_036587
Theobroma cacao
TCM_036587
I
0.940
POPTR_0005s22180
Populus trichocarpa
POPTR_0005s22180
I
0.939
Cla013854
Citrullus lanatus
Cla013854
I
0.935
MDP0000169485
Malus domestica
MDP0000169485
I
0.933
MDP0000146969
Malus domestica
MDP0000146969
I
0.933
LjSGA_007769.1
Lotus japonicus
LjSGA_007769.1
N
0.930
cassava19069.valid.m1
Manihot esculenta
cassava19069.valid.m1
I
0.930
SapurV1A.0348s0040
Salix purpurea
SapurV1A.0348s0040
I
0.927
Cla016588
Citrullus lanatus
Cla016588
N
0.925
Cucsa.364130
Cucumis sativus
Cucsa.364130
N
0.924
Aquca_017_00010
Aquilegia coerulea
Aquca_017_00010
N
0.903
mg018130m
Mimulus guttatus
mg018130m
I
0.899
Solyc04g072220.2
Solanum lycopersicum
Solyc04g072220.2
I
0.894
Bra039745
Brassica rapa
Bra039745
I
0.890
Bostr.26959s0323
Boechera stricta
Bostr.26959s0323
I
0.890
Bo2g052630
Brassica oleracea
Bo2g052630
I
0.890
Cagra.11446s0003
Capsella grandiflora
Cagra.11446s0003
I
0.890
Carubv10021788m.g
Capsella rubella
Carubv10021788m.g
I
0.890
Thhalv10018275m.g
Eutrema salsugineum
Thhalv10018275m.g
I
0.890
anac028
Arabidopsis thaliana
AT1G65910
D
0.888
anac028
Arabidopsis lyrata
Al_scaffold_0002_1137
I
0.888
PGSC0003DMG400031149
Solanum tuberosum
PGSC0003DMG400031149
I
0.886
ANAC13
Arabidopsis lyrata
fgenesh2_kg.1__3425__AT1G32870.2
I
0.886
Bostr.3359s0074
Boechera stricta
Bostr.3359s0074
I
0.882
Cagra.1443s0015
Capsella grandiflora
Cagra.1443s0015
I
0.880
ANAC13
Arabidopsis thaliana
AT1G32870
D
0.878
Carubv10008817m.g
Capsella rubella
Carubv10008817m.g
I
0.878
Aquca_009_00966
Aquilegia coerulea
Aquca_009_00966
I
0.876
Thhalv10007369m.g
Eutrema salsugineum
Thhalv10007369m.g
I
0.874
GSMUA_AchrUn_randomG11980_001
Musa acuminata
GSMUA_AchrUn_randomG11980_001
I
0.871