Gorai.009G260000 (Gossypium raimondii)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Gorai.009G260000 T298141_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC13
M07170_2.00 		Arabidopsis thaliana
TDNCTTGYYNNNCAAG
CTTGNNNRRCAAGNHA		 Dap-seq
OMalley et al.(2016)
ANAC013_col_a 		0.880 0.734
ANAC13
M07171_2.00 		Arabidopsis thaliana
CTTGYBHNNCAAGNHAH
DTDNCTTGNNDVRCAAG		 Dap-seq
OMalley et al.(2016)
ANAC013_colamp_a 		0.880 0.734
ANAC13
M11077_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANAC013_Q2 		0.880 0.734
anac028
M01289_2.00 		Arabidopsis thaliana
NTTGCGTRH
DYACGCAAN		 PBM
Lambert et al.(2019)
pTH9962 		0.876 0.679
anac028
M07179_2.00 		Arabidopsis thaliana
CTTSHNNHDCAMGYWA
TWRCKTGHDNNDSAAG		 Dap-seq
OMalley et al.(2016)
ANAC028_col_a 		0.876 0.679
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G260000.1 NAC/NAM 21 147
Gorai.009G260000.2 NAC/NAM 21 147
Gorai.009G260000.3 NAC/NAM 21 147
Gorai.009G260000.4 NAC/NAM 21 147

Links

Other NAC/NAM family TFs
Other Gossypium raimondii TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_036587 Theobroma cacao TCM_036587 I 0.963
cassava22173.valid.m1 Manihot esculenta cassava22173.valid.m1 I 0.959
VIT_18s0001g01820 Vitis vinifera VIT_18s0001g01820 I 0.953
evm.TU.supercontig_26.135 Carica papaya evm.TU.supercontig_26.135 I 0.943
MDP0000146969 Malus domestica MDP0000146969 I 0.943
Gorai.005G076200 Gossypium raimondii Gorai.005G076200 I 0.943
MDP0000169485 Malus domestica MDP0000169485 I 0.943
POPTR_0002s06210 Populus trichocarpa POPTR_0002s06210 I 0.941
Ciclev10000612m.g Citrus clementina Ciclev10000612m.g I 0.941
SapurV1A.0134s0420 Salix purpurea SapurV1A.0134s0420 I 0.940
Cla013854 Citrullus lanatus Cla013854 I 0.940
POPTR_0005s22180 Populus trichocarpa POPTR_0005s22180 I 0.938
Lus10028713.g Linum usitatissimum Lus10028713.g I 0.935
Cla016588 Citrullus lanatus Cla016588 N 0.934
Cucsa.364130 Cucumis sativus Cucsa.364130 N 0.932
GLYMA10G36360 Glycine max GLYMA10G36360 N 0.928
SapurV1A.0348s0040 Salix purpurea SapurV1A.0348s0040 I 0.926
MDP0000852271 Malus domestica MDP0000852271 I 0.924
gene27539-v1.0-hybrid Fragaria vesca gene27539-v1.0-hybrid N 0.924
Pm022358 Prunus mume Pm022358 N 0.923
Aquca_017_00010 Aquilegia coerulea Aquca_017_00010 N 0.923
GLYMA20G31210 Glycine max GLYMA20G31210 N 0.923
PRUPE_ppa003410mg Prunus persica PRUPE_ppa003410mg N 0.923
Eucgr.F02771 Eucalyptus grandis Eucgr.F02771 N 0.918
MTR_1g097300 Medicago truncatula MTR_1g097300 N 0.914
Ca_04337 Cicer arietinum Ca_04337 N 0.909
PGSC0003DMG400031149 Solanum tuberosum PGSC0003DMG400031149 I 0.905
Solyc04g072220.2 Solanum lycopersicum Solyc04g072220.2 I 0.904
mg018130m Mimulus guttatus mg018130m I 0.904
GSMUA_AchrUn_randomG11980_001 Musa acuminata GSMUA_AchrUn_randomG11980_001 I 0.902
LjSGA_007769.1 Lotus japonicus LjSGA_007769.1 N 0.898
cassava19069.valid.m1 Manihot esculenta cassava19069.valid.m1 I 0.893
POPTR_0001s45700 Populus trichocarpa POPTR_0001s45700 I 0.891
Bostr.3359s0074 Boechera stricta Bostr.3359s0074 I 0.890
ANAC13 Arabidopsis lyrata fgenesh2_kg.1__3425__AT1G32870.2 I 0.888
Carubv10021788m.g Capsella rubella Carubv10021788m.g I 0.884
mgf022344m Mimulus guttatus mgf022344m I 0.884
Thhalv10018275m.g Eutrema salsugineum Thhalv10018275m.g I 0.884
Bo2g052630 Brassica oleracea Bo2g052630 I 0.884
Bostr.26959s0323 Boechera stricta Bostr.26959s0323 I 0.884
Bra039745 Brassica rapa Bra039745 I 0.884
Cagra.11446s0003 Capsella grandiflora Cagra.11446s0003 I 0.884
POPTR_0011s15230 Populus trichocarpa POPTR_0011s15230 I 0.883
PGSC0003DMG400016962 Solanum tuberosum PGSC0003DMG400016962 N 0.882
Thhalv10007369m.g Eutrema salsugineum Thhalv10007369m.g I 0.880
ANAC13 Arabidopsis thaliana AT1G32870 D 0.880
Lus10033251.g Linum usitatissimum Lus10033251.g I 0.879
Cagra.1443s0015 Capsella grandiflora Cagra.1443s0015 I 0.879
Lus10008285.g Linum usitatissimum Lus10008285.g I 0.879
Eucgr.E01095 Eucalyptus grandis Eucgr.E01095 I 0.878
Pm029581 Prunus mume Pm029581 I 0.877
PRUPE_ppa001291mg Prunus persica PRUPE_ppa001291mg I 0.877
Carubv10008817m.g Capsella rubella Carubv10008817m.g I 0.877
anac028 Arabidopsis lyrata Al_scaffold_0002_1137 I 0.876
anac028 Arabidopsis thaliana AT1G65910 D 0.876
Solyc12g056790.1 Solanum lycopersicum Solyc12g056790.1 I 0.871