gene23561-v1.0-hybrid (Fragaria vesca)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 gene23561-v1.0-hybrid T297985_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.879 0.807
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.879 0.807
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna23561.1-v1.0-hybrid NAC/NAM 25 151

Links

Other NAC/NAM family TFs
Other Fragaria vesca TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK06477.1 Cannabis sativa PK06477.1 I 0.950
Cla020838 Citrullus lanatus Cla020838 I 0.943
Ca_08371 Cicer arietinum Ca_08371 I 0.941
GLYMA10G34130 Glycine max GLYMA10G34130 I 0.941
GLYMA20G33430 Glycine max GLYMA20G33430 I 0.941
chr5.CM0909.750.nc Lotus japonicus chr5.CM0909.750.nc I 0.940
MDP0000258167 Malus domestica MDP0000258167 I 0.939
Cucsa.308760 Cucumis sativus Cucsa.308760 I 0.939
MTR_1g090720 Medicago truncatula MTR_1g090720 I 0.937
Bra029844 Brassica rapa Bra029844 I 0.917
Bo5g137360 Brassica oleracea Bo5g137360 I 0.917
Pm017547 Prunus mume Pm017547 I 0.911
MDP0000437676 Malus domestica MDP0000437676 I 0.910
Eucgr.G02740 Eucalyptus grandis Eucgr.G02740 N 0.901
Bra001366 Brassica rapa Bra001366 I 0.899
cassava22912.valid.m1 Manihot esculenta cassava22912.valid.m1 I 0.895
POPTR_0010s23630 Populus trichocarpa POPTR_0010s23630 I 0.894
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I 0.894
Lus10038670.g Linum usitatissimum Lus10038670.g I 0.893
Lus10037939.g Linum usitatissimum Lus10037939.g I 0.893
Gorai.012G007000 Gossypium raimondii Gorai.012G007000 I 0.892
TCM_043357 Theobroma cacao TCM_043357 I 0.892
Bo3g062700 Brassica oleracea Bo3g062700 I 0.891
Bra001365 Brassica rapa Bra001365 I 0.891
ANAC050 Arabidopsis thaliana AT3G10480 D 0.888
Gorai.009G309300 Gossypium raimondii Gorai.009G309300 I 0.882
Thhalv10020745m.g Eutrema salsugineum Thhalv10020745m.g I 0.881
Bo3g062710 Brassica oleracea Bo3g062710 I 0.881
Lus10023537.g Linum usitatissimum Lus10023537.g I 0.880
Cagra.0834s0028 Capsella grandiflora Cagra.0834s0028 I 0.880
Thhalv10020717m.g Eutrema salsugineum Thhalv10020717m.g I 0.880
Carubv10013564m.g Capsella rubella Carubv10013564m.g I 0.880
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I 0.879
PGSC0003DMG400031072 Solanum tuberosum PGSC0003DMG400031072 N 0.879
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I 0.879
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I 0.879
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I 0.879
Carubv10013694m.g Capsella rubella Carubv10013694m.g I 0.879
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I 0.879
GRMZM2G125777 Zea mays GRMZM2G125777 I 0.876
orange1.1g014130m.g Citrus sinensis orange1.1g014130m.g I 0.871
Ciclev10031606m.g Citrus clementina Ciclev10031606m.g I 0.871