CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
vdrb
(
Danio rerio
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSDARG00000070721
T302904_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables nuclear receptor activity. Contributes to DNA-binding transcription factor activity and vitamin D response element binding activity. Acts upstream of or within embryonic heart tube morphogenesis and inner ear development. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including digestive system; heart; intestinal bulb primordium; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); lipid storage disease (multiple); melanoma (multiple); and tuberculosis (multiple). Orthologous to human VDR (vitamin D receptor). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN
NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.990
0.886
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.985
0.929
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.985
0.929
VDR
M05877_2.00
Homo sapiens
HRRGTTCA
TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.985
0.929
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.985
0.929
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.985
0.929
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.985
0.929
VDR
M11116_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.985
0.929
VDR
M11117_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.985
0.929
VDR
M11118_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.985
0.929
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.953
0.686
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.953
0.686
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.953
0.686
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.953
0.686
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH
DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.913
0.657
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.880
0.657
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.835
0.657
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH
DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.835
0.657
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.835
0.657
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN
NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.835
0.657
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
0.808
0.600
nr1h5.S
M11194_2.00
Xenopus laevis
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRIR1_Q6
0.805
0.543
EcR
M06414_2.00
Drosophila melanogaster
RAGGTCAW
WTGACCTY
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
0.801
0.543
THRB
M03379_2.00
Homo sapiens
DTGACCTBATVAGGTCAN
NTGACCTBATVAGGTCAH
SELEX
Jolma et al.(2013)
THRB_1
0.795
0.500
THRB
M03380_2.00
Homo sapiens
DTGACCTBANTRAGGTCAH
DTGACCTYANTVAGGTCAH
SELEX
Jolma et al.(2013)
THRB_2
0.795
0.500
THRB
M03381_2.00
Homo sapiens
NTGWCCTYADNTRAGGTCAH
DTGACCTYANHTRAGGWCAN
SELEX
Jolma et al.(2013)
THRB_3
0.795
0.500
THRB
M05629_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_1
0.795
0.500
THRB
M05630_2.00
Homo sapiens
NRRGGTCAYGACCYYN
NRRGGTCRTGACCYYN
SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_2
0.795
0.500
THRB
M05633_2.00
Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN
SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_1
0.795
0.500
THRB
M05634_2.00
Homo sapiens
TRAGGTCABVYVAGGTCAH
DTGACCTBRBVTGACCTYA
SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_2
0.795
0.500
THRB
M09285_2.00
Homo sapiens
VRVSYVABVKSAGGWCA
TGWCCTSMBVTBRSBYB
Misc
Kulakovskiy et al.(2013)
THB_HUMAN.H11MO.0.C
0.795
0.500
THRB
M11150_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$T3RBETA_Q6_01
0.795
0.500
THRB
M05631_2.00
Homo sapiens
NRGGTYRDRGGKYRN
NYRMCCYHYRACCYN
SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_1
0.795
0.500
THRB
M05632_2.00
Homo sapiens
NNRGGTCAYGACCYBN
NVRGGTCRTGACCYNN
SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_2
0.795
0.500
THRB
M05635_2.00
Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN
SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_1
0.795
0.500
THRB
M05636_2.00
Homo sapiens
YRAGGWCAYGYRAGGWCAH
DTGWCCTYRCRTGWCCTYR
SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_2
0.795
0.500
GAG_AVIER
M11193_2.00
Avian erythroblastosis virus
VHNTRAGGTCACSSNN
NNSSGTGACCTYANDB
Transfac
Matys et al.(2006)
V$T3R_01
0.794
0.486
THRA
M03368_2.00
Homo sapiens
DTGACCTYATVAGGTCAH
DTGACCTBATRAGGTCAH
SELEX
Jolma et al.(2013)
THRA_1
0.780
0.486
THRA
M09275_2.00
Homo sapiens
RGKWSDNNYVAGGWSAN
NTSWCCTBRNNHSWMCY
Misc
Kulakovskiy et al.(2013)
THA_HUMAN.H11MO.0.C
0.780
0.486
Thra
M09333_2.00
Mus musculus
VRGGKCANNYVRGGHCA
TGDCCYBRNNTGMCCYB
Misc
Kulakovskiy et al.(2013)
THA_MOUSE.H11MO.0.C
0.780
0.486
Thra
M09619_2.00
Mus musculus
GGKCANNYVRGGHCA
TGDCCYBRNNTGMCC
Misc
Heinz et al.(2010)
C17.2-THRa_GSE38347
0.780
0.486
THRA
M11135_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$T3RALPHA_Q6
0.780
0.486
Hr4
M06435_2.00
Drosophila melanogaster
AAGGTCA
TGACCTT
B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546
0.766
0.486
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000094891
Nuclear receptor
21
90
RICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRKASFTCPFNGSCTITKDNRRHCQACRLKRCLDIGMMK
ENSDARP00000125655
Nuclear receptor
21
90
RICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRKASFTCPFNGSCTITKDNRRHCQACRLKRCLDIGMMK
ENSDARP00000126141
Nuclear receptor
21
90
RICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRKASFTCPFNGSCTITKDNRRHCQACRLKRCLDIGMMK
Links
Other
Nuclear receptor
family TFs
Other
Danio rerio
TFs
551 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy