PXEA_0002614201 (Protopolystoma xenopodis)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 PXEA_0002614201 T312891_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.720 0.720
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.720 0.720
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.720 0.720
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.720 0.720
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.720 0.720
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.720 0.720
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.720 0.720
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.720 0.720
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.720 0.720
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.720 0.720
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.720 0.720
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.720 0.720
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.720 0.720
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.720 0.720
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.720 0.720
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.720 0.720
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.720 0.720
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.720 0.720
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.720 0.720
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.720 0.720
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.707 0.707
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.707 0.707
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.707 0.707
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.707 0.707
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PXEA_0002614201-mRNA-1 Paired box 1 75

Links

Other Paired box family TFs
Other Protopolystoma xenopodis TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SSLN_0001115101 Schistocephalus solidus SSLN_0001115101 I 0.907
SCUD_0000535601 Schistosoma curassoni SCUD_0000535601 I 0.893
SMTD_0001015101 Schistosoma mattheei SMTD_0001015101 N 0.893
BGLB007764 Biomphalaria glabrata BGLB007764 I 0.853
AMAM010937 Anopheles maculatus AMAM010937 I 0.827
Cflo_05394--XP_001120031.1_APIME Camponotus floridanus Cflo_05394--XP_001120031.1_APIME I 0.827
nAv.1.0.1.g05236 Acanthocheilonema viteae nAv.1.0.1.g05236 I 0.813
WBGene00241130 Onchocerca volvulus WBGene00241130 I 0.813
Bm14693 Brugia malayi Bm14693 I 0.813
nDi.2.2.2.g03678 Dirofilaria immitis nDi.2.2.2.g03678 I 0.813
CLEC008846 Cimex lectularius CLEC008846 I 0.813
TCLT_0000192601 Thelazia callipaeda TCLT_0000192601 N 0.813
nOo.2.0.1.g04580 Onchocerca ochengi nOo.2.0.1.g04580 I 0.813
L596_g12356 Steinernema carpocapsae L596_g12356 I 0.800
ECANG7_07793 Echinococcus canadensis ECANG7_07793 I 0.787
pax6a Danio rerio ENSDARG00000103379 I 0.786
pax6b Danio rerio ENSDARG00000045936 I 0.781
CBG04481 Caenorhabditis briggsae CBG04481 I 0.773
AAC60302 Xenopus laevis AAC60302 I 0.753
DAPPUDRAFT_38922 Daphnia pulex DAPPUDRAFT_38922 I 0.741
pax5 Tetraodon nigroviridis ENSTNIG00000005085 I 0.733
LCUP013028 Lucilia cuprina LCUP013028 I 0.727
ACAC_0001290301 Angiostrongylus cantonensis ACAC_0001290301 I 0.722
ACOC_0000178201 Angiostrongylus costaricensis ACOC_0000178201 I 0.722
L889_g28670 Steinernema feltiae L889_g28670 I 0.720
L596_g7168 Steinernema carpocapsae L596_g7168 I 0.720
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.720
pax2a Danio rerio ENSDARG00000028148 I 0.720
PAX5 Anolis carolinensis ENSACAG00000011646 I 0.720
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.720
ENSGMOG00000000463 Gadus morhua ENSGMOG00000000463 I 0.720
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.720
ENSPFOG00000003702 Poecilia formosa ENSPFOG00000003702 I 0.720
ENSONIG00000016065 Oreochromis niloticus ENSONIG00000016065 I 0.720
LCUP015670 Lucilia cuprina LCUP015670 I 0.714
LotgiG135549 Lottia gigantea LotgiG135549 I 0.707
ACEP12359 Atta cephalotes ACEP12359 I 0.707
pax2.L Xenopus laevis XB-GENE-486805 I 0.707
PAX8 Microcebus murinus ENSMICG00000003265 I 0.707
PAX8 Ochotona princeps ENSOPRG00000012910 I 0.707
HelroG124549 Helobdella robusta HelroG124549 I 0.707
GM13025 Drosophila sechellia FBgn0167956 I 0.707
L898_g18055 Steinernema monticolum L898_g18055 I 0.707