CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SCUD_0000535601
(
Schistosoma curassoni
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00292 (PAX)
IPR001523
SCUD_0000535601
T312910_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR
YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.754
0.754
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.754
0.754
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN
NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.737
0.737
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.737
0.737
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.737
0.737
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.737
0.737
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.737
0.737
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.737
0.737
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.737
0.737
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.737
0.737
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.737
0.737
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.737
0.737
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.737
0.737
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG
CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.737
0.737
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.737
0.737
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.737
0.737
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.737
0.737
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.737
0.737
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.737
0.737
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.737
0.737
PAX5
M11210_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.737
0.737
PAX5
M11211_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.737
0.737
PAX5
M11212_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.737
0.737
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.720
0.720
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.720
0.720
PAX8
M11205_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.720
0.720
PAX8
M11206_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.720
0.720
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.720
0.720
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SCUD_0000535601-mRNA-1
Paired box
20
137
GHSGVNQLGGMFVNGRPLPDTTRQRIIELAHSGARPCDISRILQVSNGCVSKILCRYYETGSIRPKAIGGSKPRVATNLVVLKIAHYKRECPSIFAWEIRDRLLQEGICTTENIPSVS
Links
Other
Paired box
family TFs
Other
Schistosoma curassoni
TFs
183 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A_03128
Schistosoma haematobium
A_03128
I
0.944
D915_05709
Fasciola hepatica
D915_05709
I
0.943
Sjc_0004220
Schistosoma japonicum
Sjc_0004220
I
0.928
ECPE_0001376401
Echinostoma caproni
ECPE_0001376401
I
0.919
pax6a
Danio rerio
ENSDARG00000103379
I
0.914
SSLN_0001115101
Schistocephalus solidus
SSLN_0001115101
I
0.907
pax6b
Danio rerio
ENSDARG00000045936
I
0.906
ECPE_0000273501
Echinostoma caproni
ECPE_0000273501
I
0.902
PXEA_0002614201
Protopolystoma xenopodis
PXEA_0002614201
I
0.893
BGLB007764
Biomphalaria glabrata
BGLB007764
I
0.890
AAC60302
Xenopus laevis
AAC60302
I
0.889
DAPPUDRAFT_38922
Daphnia pulex
DAPPUDRAFT_38922
I
0.889
PXEA_0001769401
Protopolystoma xenopodis
PXEA_0001769401
N
0.882
TRE_0000921601
Trichobilharzia regenti
TRE_0000921601
I
0.880
LCUP013028
Lucilia cuprina
LCUP013028
I
0.873
LCUP015670
Lucilia cuprina
LCUP015670
I
0.857
PAX6
Homo sapiens
ENSG00000007372
D
0.857
Pax6
Mus musculus
ENSMUSG00000027168
D
0.857
SMTD_0001015101
Schistosoma mattheei
SMTD_0001015101
N
0.856
DILT_0000442801
Diphyllobothrium latum
DILT_0000442801
I
0.856
SPER_0000208501
Spirometra erinaceieuropaei
SPER_0000208501
N
0.851
KGM_02181
Danaus plexippus
KGM_02181
I
0.850
ACAC_0001290301
Angiostrongylus cantonensis
ACAC_0001290301
I
0.848
ACOC_0000178201
Angiostrongylus costaricensis
ACOC_0000178201
I
0.848
Cflo_05394--XP_001120031.1_APIME
Camponotus floridanus
Cflo_05394--XP_001120031.1_APIME
I
0.847
CLEC008846
Cimex lectularius
CLEC008846
I
0.847
DILT_0000606101
Diphyllobothrium latum
DILT_0000606101
N
0.843
pax6b
Gasterosteus aculeatus
ENSGACG00000016030
I
0.840
RPRC001429
Rhodnius prolixus
RPRC001429
I
0.837
RPRC003362
Rhodnius prolixus
RPRC003362
I
0.835
HMEL009702
Heliconius melpomene
HMEL009702
I
0.835
Ocbimv22011111m.g
Octopus bimaculoides
Ocbimv22011111m.g
I
0.832
AMAM010937
Anopheles maculatus
AMAM010937
I
0.831
ECANG7_07793
Echinococcus canadensis
ECANG7_07793
I
0.831
SINV17241
Solenopsis invicta
SINV17241
I
0.826
LDEC008984
Leptinotarsa decemlineata
LDEC008984
I
0.825
PHUM217120
Pediculus humanus
PHUM217120
I
0.824
nRc.2.0.1.g00894
Romanomermis culicivorax
nRc.2.0.1.g00894
I
0.824
SPU_006786
Strongylocentrotus purpuratus
SPU_006786
I
0.816
ANCCEY_08417
Ancylostoma ceylanicum
ANCCEY_08417
I
0.815
CLEC008733
Cimex lectularius
CLEC008733
I
0.811
ACEP24464
Atta cephalotes
ACEP24464
I
0.808
YQE_05107
Dendroctonus ponderosae
YQE_05107
I
0.805
CLEC006621
Cimex lectularius
CLEC006621
I
0.804
PAX5
Tupaia belangeri
ENSTBEG00000007983
I
0.800
PAX5
Tursiops truncatus
ENSTTRG00000006049
I
0.800
ENSTSYG00000008085
Tarsius syrichta
ENSTSYG00000008085
I
0.800
DAPPUDRAFT_122807
Daphnia pulex
DAPPUDRAFT_122807
I
0.798
L596_g12356
Steinernema carpocapsae
L596_g12356
I
0.797
AATE019182
Anopheles atroparvus
AATE019182
I
0.795
ACEP20912
Atta cephalotes
ACEP20912
N
0.792
TASK_0000210301
Taenia asiatica
TASK_0000210301
I
0.792
TsM_000804100
Taenia solium
TsM_000804100
I
0.792
TTAC_0000709401
Hydatigera taeniaeformis
TTAC_0000709401
I
0.792
ENSCSAVG00000007987
Ciona savignyi
ENSCSAVG00000007987
I
0.789
nOo.2.0.1.g04580
Onchocerca ochengi
nOo.2.0.1.g04580
I
0.788
WBGene00241130
Onchocerca volvulus
WBGene00241130
I
0.788
nAv.1.0.1.g05236
Acanthocheilonema viteae
nAv.1.0.1.g05236
I
0.788
nDi.2.2.2.g03678
Dirofilaria immitis
nDi.2.2.2.g03678
I
0.788
TCLT_0000192601
Thelazia callipaeda
TCLT_0000192601
N
0.788
Bm14693
Brugia malayi
Bm14693
I
0.788
SBAD_0001213701
Soboliphyme baturini
SBAD_0001213701
I
0.786
EmuJ_000389800
Echinococcus multilocularis
EmuJ_000389800
I
0.784
ACOM023323
Anopheles coluzzii
ACOM023323
I
0.782
CBG04481
Caenorhabditis briggsae
CBG04481
I
0.780
HDID_0000853801
Hymenolepis diminuta
HDID_0000853801
N
0.779
BGIBMGA009545
Bombyx mori
BGIBMGA009545
I
0.778
TELCIR_00311
Teladorsagia circumcincta
TELCIR_00311
I
0.776
BGIBMGA009432
Bombyx mori
BGIBMGA009432
I
0.776
NECAME_04524
Necator americanus
NECAME_04524
I
0.776
HmN_000735200
Hymenolepis microstoma
HmN_000735200
N
0.776
ENSMEUG00000011758
Macropus eugenii
ENSMEUG00000011758
I
0.768
nRc.2.0.1.g30341
Romanomermis culicivorax
nRc.2.0.1.g30341
I
0.768
L889_g29910
Steinernema feltiae
L889_g29910
I
0.768
EVEC_0000795701
Enterobius vermicularis
EVEC_0000795701
I
0.766
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0
I
0.765
WUBG_13045
Wuchereria bancrofti
WUBG_13045
I
0.762
OFLC_0001383501
Onchocerca flexuosa
OFLC_0001383501
I
0.760
ENSPFOG00000003702
Poecilia formosa
ENSPFOG00000003702
I
0.754
ENSONIG00000016065
Oreochromis niloticus
ENSONIG00000016065
I
0.754
ANCDUO_03668
Ancylostoma duodenale
ANCDUO_03668
N
0.754
DME_0000186001
Dracunculus medinensis
DME_0000186001
N
0.752
OESDEN_18680
Oesophagostomum dentatum
OESDEN_18680
I
0.750
ENSGMOG00000000463
Gadus morhua
ENSGMOG00000000463
I
0.746
MESCA003563
Megaselia scalaris
MESCA003563
I
0.746
GK13586
Drosophila willistoni
FBgn0215594
I
0.746
spa-sv
Drosophila pseudoobscura
FBgn0249275
I
0.746
GJ13730
Drosophila virilis
FBgn0200951
I
0.746
GL18401
Drosophila persimilis
FBgn0156002
I
0.746
GI14046
Drosophila mojavensis
FBgn0136800
I
0.746
GH23966
Drosophila grimshawi
FBgn0131423
I
0.746
L893_g1041
Steinernema glaseri
L893_g1041
I
0.744
MCINX012239
Melitaea cinxia
MCINX012239
I
0.744
AALB001179
Anopheles albimanus
AALB001179
I
0.743
PAX8
Vicugna pacos
ENSVPAG00000003973
I
0.741
LOAG_04187
Loa loa
LOAG_04187
N
0.740
Pax5
Rattus norvegicus
ENSRNOG00000024729
I
0.737
ACEP12359
Atta cephalotes
ACEP12359
I
0.737
ENSTNIG00000013141
Tetraodon nigroviridis
ENSTNIG00000013141
I
0.737
pax5
Tetraodon nigroviridis
ENSTNIG00000005085
I
0.737
pax2a
Danio rerio
ENSDARG00000028148
I
0.737
LLOJ002076
Lutzomyia longipalpis
LLOJ002076
I
0.737
ENSLACG00000013159
Latimeria chalumnae
ENSLACG00000013159
I
0.737
ALUE_0000749601
Ascaris lumbricoides
ALUE_0000749601
N
0.736
Ppa-vab-3
Pristionchus pacificus
PPA03442
I
0.736
scaffold478-EXSNAP2012.12
Pristionchus exspectatus
scaffold478-EXSNAP2012.12
I
0.736
ASU_08112
Ascaris suum
ASU_08112
N
0.734
EEL_0000889701
Elaeophora elaphi
EEL_0000889701
N
0.734
HMEL002395
Heliconius melpomene
HMEL002395
N
0.733
LDEC006108
Leptinotarsa decemlineata
LDEC006108
N
0.730
ENSACAG00000011033
Anolis carolinensis
ENSACAG00000011033
I
0.730
KGM_12316
Danaus plexippus
KGM_12316
I
0.730
pax2.L
Xenopus laevis
XB-GENE-486805
I
0.729
GM13025
Drosophila sechellia
FBgn0167956
I
0.729
ENSLOCG00000012825
Lepisosteus oculatus
ENSLOCG00000012825
I
0.729
HelroG124549
Helobdella robusta
HelroG124549
I
0.729
PAX5
Anolis carolinensis
ENSACAG00000011646
I
0.729
BTMF_0000869901
Brugia timori
BTMF_0000869901
N
0.728
nLs.2.1.2.g01338
Litomosoides sigmodontis
nLs.2.1.2.g01338
N
0.728
PEQ_0001140301
Parascaris equorum
PEQ_0001140301
N
0.728
AARA010781
Anopheles arabiensis
AARA010781
I
0.724
LCUP011945
Lucilia cuprina
LCUP011945
I
0.721
YQE_12361
Dendroctonus ponderosae
YQE_12361
I
0.721
LotgiG135549
Lottia gigantea
LotgiG135549
I
0.720
pax8
Danio rerio
ENSDARG00000015879
I
0.720
ENSAMXG00000005158
Astyanax mexicanus
ENSAMXG00000005158
I
0.720
Pax5
Dipodomys ordii
ENSDORG00000015818
I
0.719
Ogr18043
Ophisaurus gracilis
Ogr18043
I
0.718
BGIBMGA013358
Bombyx mori
BGIBMGA013358
I
0.718
Pax2
Rattus norvegicus
ENSRNOG00000014253
I
0.718
PAX2
Loxodonta africana
ENSLAFG00000002388
I
0.718
SNAPOd2T00015306001
Oikopleura dioica
SNAPOd2T00015306001
N
0.714
Ocbimv22007526m.g
Octopus bimaculoides
Ocbimv22007526m.g
I
0.713
LDEC012767
Leptinotarsa decemlineata
LDEC012767
I
0.713
PAX2
Homo sapiens
ENSG00000075891
D
0.712
L898_g18055
Steinernema monticolum
L898_g18055
I
0.712
AGAP000057
Anopheles gambiae
AGAP000057
I
0.712
pax2
Xenopus tropicalis
XB-GENE-486801
D
0.712
pax2b
Danio rerio
ENSDARG00000032578
D
0.712
LCUP015671
Lucilia cuprina
LCUP015671
N
0.712
DAPPUDRAFT_311028
Daphnia pulex
DAPPUDRAFT_311028
I
0.712
Sakowv30025789m.g
Saccoglossus kowalevskii
Sakowv30025789m.g
I
0.712
Ocbimv22007901m.g
Octopus bimaculoides
Ocbimv22007901m.g
I
0.712
Pax-2
Gallus gallus
ENSGALG00000005689
I
0.712
SPU_014539
Strongylocentrotus purpuratus
SPU_014539
I
0.712
ENSLOCG00000015261
Lepisosteus oculatus
ENSLOCG00000015261
I
0.712
ACHR009800
Anopheles christyi
ACHR009800
I
0.712
ACUA027429
Anopheles culicifacies
ACUA027429
I
0.712
AMEM003247
Anopheles merus
AMEM003247
I
0.712
AMIN002123
Anopheles minimus
AMIN002123
I
0.712
CGI_10024166
Crassostrea gigas
CGI_10024166
I
0.712
AMEC016969
Anopheles melas
AMEC016969
I
0.712
AFUN011579
Anopheles funestus
AFUN011579
I
0.712
HPBE_0000479901
Heligmosomoides bakeri
HPBE_0000479901
I
0.710
AEPI004837
Anopheles epiroticus
AEPI004837
I
0.705
ADIR011362
Anopheles dirus
ADIR011362
I
0.705
pax2b
Oryzias latipes
ENSORLG00000009321
I
0.704
ENSPFOG00000013202
Poecilia formosa
ENSPFOG00000013202
I
0.704
ENSONIG00000018496
Oreochromis niloticus
ENSONIG00000018496
I
0.704
ENSLOCG00000005490
Lepisosteus oculatus
ENSLOCG00000005490
I
0.704
pax5
Takifugu rubripes
ENSTRUG00000003227
I
0.704
ENSGMOG00000012561
Gadus morhua
ENSGMOG00000012561
I
0.704
pax2a
Takifugu rubripes
ENSTRUG00000008891
I
0.704
ENSXMAG00000012680
Xiphophorus maculatus
ENSXMAG00000012680
I
0.704
ENSPFOG00000011719
Poecilia formosa
ENSPFOG00000011719
I
0.704
GF20618
Drosophila ananassae
FBgn0097624
I
0.704
pax5
Danio rerio
ENSDARG00000037383
I
0.704
tetur29g01000
Tetranychus urticae
tetur29g01000
I
0.704
pax2a
Gasterosteus aculeatus
ENSGACG00000008391
I
0.704
ACYPI000633
Acyrthosiphon pisum
ACYPI000633
I
0.704
ADIR000964
Anopheles dirus
ADIR000964
I
0.703
DICVIV_04707
Dictyocaulus viviparus
DICVIV_04707
I
0.703
ENSPFOG00000023634
Poecilia formosa
ENSPFOG00000023634
N
0.703
TELCIR_10899
Teladorsagia circumcincta
TELCIR_10899
I
0.703
pax8
Tetraodon nigroviridis
ENSTNIG00000009029
I
0.703
L889_g28670
Steinernema feltiae
L889_g28670
I
0.703
L596_g7168
Steinernema carpocapsae
L596_g7168
I
0.703
HCOI01205400
Haemonchus contortus
HCOI01205400
I
0.703
CapteG119889
Capitella teleta
CapteG119889
I
0.702
PAX8
Ochotona princeps
ENSOPRG00000012910
I
0.702
SINV11533
Solenopsis invicta
SINV11533
I
0.702
PAX8
Microcebus murinus
ENSMICG00000003265
I
0.702
AQUA004184
Anopheles quadriannulatus
AQUA004184
I
0.701