LCORL (Choloepus hoffmanni)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSCHOG00000006922 T313523_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M02431_2.00		 Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		0.800 0.800
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.800 0.800
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02431_2.00 Pipsqueak 51 96

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000006124 Pipsqueak 382 427

Links

Other Pipsqueak family TFs
Other Choloepus hoffmanni TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Myotis_brandtii_LCORL_10024398 Myotis brandtii Myotis_brandtii_LCORL_10024398 I 1.000
LCORL Homo sapiens ENSG00000178177 D 1.000
LCORL Tupaia belangeri ENSTBEG00000012926 I 1.000
lcor Danio rerio ENSDARG00000100908 I 0.822
ENSSSCG00000010511 Sus scrofa ENSSSCG00000010511 I 0.800
ENSSTOG00000010808 Ictidomys tridecemlineatus ENSSTOG00000010808 I 0.800
ENSTTRG00000009856 Tursiops truncatus ENSTTRG00000009856 I 0.800
ENSTGUG00000009834 Taeniopygia guttata ENSTGUG00000009834 I 0.800
ENSTBEG00000005837 Tupaia belangeri ENSTBEG00000005837 I 0.800
ENSSHAG00000018667 Sarcophilus harrisii ENSSHAG00000018667 I 0.800
ENSPSIG00000009179 Pelodiscus sinensis ENSPSIG00000009179 I 0.800
ENSPFOG00000009902 Poecilia formosa ENSPFOG00000009902 I 0.800
LCOR Pan troglodytes ENSPTRG00000002800 I 0.800
ENSPVAG00000003364 Pteropus vampyrus ENSPVAG00000003364 I 0.800
ENSSARG00000008230 Sorex araneus ENSSARG00000008230 I 0.800
Lcor Rattus norvegicus ENSRNOG00000042679 I 0.800
ENSVPAG00000007583 Vicugna pacos ENSVPAG00000007583 I 0.800
Afo_R002709 Aptenodytes forsteri Afo_R002709 I 0.800
Myotis_brandtii_LCOR_10025723 Myotis brandtii Myotis_brandtii_LCOR_10025723 I 0.800
Gfo_R002325 Geospiza fortis Gfo_R002325 I 0.800
Ogr16502 Ophisaurus gracilis Ogr16502 I 0.800
Pvit_17823 Pogona vitticeps Pvit_17823 I 0.800
lcorl Xenopus tropicalis XB-GENE-995017 D 0.800
Tal_R010723 Tyto alba Tal_R010723 I 0.800
ENSP00000360138 Macaca fascicularis ENSP00000360138 I 0.800
ENSBTAP00000005261-D1 Bos grunniens ENSBTAP00000005261-D1 I 0.800
ENSPCAG00000007084 Procavia capensis ENSPCAG00000007084 I 0.800
Aan_R012556 Calypte anna Aan_R012556 I 0.800
Alligator_sinensis_CCG020164.1 Alligator sinensis Alligator_sinensis_CCG020164.1 I 0.800
Brh_R001506 Buceros rhinoceros Brh_R001506 I 0.800
Cmyd_10003742 Chelonia mydas Cmyd_10003742 I 0.800
ENSXMAG00000005637 Xiphophorus maculatus ENSXMAG00000005637 I 0.800
ENSOPRG00000014745 Ochotona princeps ENSOPRG00000014745 I 0.800
ENSECAG00000013517 Equus caballus ENSECAG00000013517 I 0.800
ENSCSAG00000006043 Chlorocebus sabaeus ENSCSAG00000006043 I 0.800
ENSETEG00000015066 Echinops telfairi ENSETEG00000015066 I 0.800
ENSFALG00000008484 Ficedula albicollis ENSFALG00000008484 I 0.800
LCOR Homo sapiens ENSG00000196233 I 0.800
ENSFCAG00000028121 Felis catus ENSFCAG00000028121 I 0.800
ENSCPOG00000005739 Cavia porcellus ENSCPOG00000005739 I 0.800
ENSCJAG00000016484 Callithrix jacchus ENSCJAG00000016484 I 0.800
ENSAPLG00000003032 Anas platyrhynchos ENSAPLG00000003032 I 0.800
ENSAMXG00000021599 Astyanax mexicanus ENSAMXG00000021599 I 0.800
ENSBTAG00000004029 Bos taurus ENSBTAG00000004029 I 0.800
ENSCAFG00000008905 Canis familiaris ENSCAFG00000008905 I 0.800
ENSCHOG00000001981 Choloepus hoffmanni ENSCHOG00000001981 I 0.800
ENSGALG00000023649 Gallus gallus ENSGALG00000023649 I 0.800
ENSGGOG00000026110 Gorilla gorilla ENSGGOG00000026110 I 0.800
ENSNLEG00000013648 Nomascus leucogenys ENSNLEG00000013648 I 0.800
Lcor Mus musculus ENSMUSG00000025019 I 0.800
ENSOARG00000008725 Ovis aries ENSOARG00000008725 I 0.800
ENSOGAG00000008137 Otolemur garnettii ENSOGAG00000008137 I 0.800
ENSAMEG00000000186 Ailuropoda melanoleuca ENSAMEG00000000186 I 0.800
ENSONIG00000000255 Oreochromis niloticus ENSONIG00000000255 I 0.800
ENSMODG00000004531 Monodelphis domestica ENSMODG00000004531 I 0.800
ENSMMUG00000010425 Macaca mulatta ENSMMUG00000010425 I 0.800
ENSLOCG00000012823 Lepisosteus oculatus ENSLOCG00000012823 I 0.800
ENSLAFG00000014271 Loxodonta africana ENSLAFG00000014271 I 0.800
ENSMGAG00000009953 Meleagris gallopavo ENSMGAG00000009953 D 0.800
ENSMICG00000007572 Microcebus murinus ENSMICG00000007572 I 0.800
ENSMLUG00000000494 Myotis lucifugus ENSMLUG00000000494 I 0.800
ENSORLG00000000044 Oryzias latipes ENSORLG00000000044 D 0.800