lcor (Danio rerio)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSDARG00000100908 T313541_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ENSORLG00000000044
M02434_2.00
Oryzias latipes
CCCAAAWT

AWTTTGGG
PBM
Weirauch et al.(2014)
pTH9275
0.978 0.978
ENSMGAG00000009953
M02433_2.00
Meleagris gallopavo
NNNYNAAWNN

NNWTTNRNNN
PBM
Weirauch et al.(2014)
pTH8649
0.933 0.933
lcorl
M02438_2.00
Xenopus tropicalis
NYCNAAWHN

NDWTTNGRN
PBM
Weirauch et al.(2014)
pTH8558
0.933 0.933
ENSACAG00000012432
M02430_2.00
Anolis carolinensis
NNNCNAAWNN

NNWTTNGNNN
PBM
Weirauch et al.(2014)
pTH9220
0.889 0.889
LCORL
M02431_2.00
Choloepus hoffmanni
NNYNAAHNN

NNDTTNRNN
PBM
Weirauch et al.(2014)
pTH9253
0.822 0.822
ENSGACG00000007469
M02432_2.00
Gasterosteus aculeatus
NVNMGAWACH

DGTWTCKNBN
PBM
Weirauch et al.(2014)
pTH9179
0.800 0.800
ENSORLG00000007805
M02435_2.00
Oryzias latipes
SCNAAWNNNN

NNNNWTTNGS
PBM
Weirauch et al.(2014)
pTH9277
0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000140998 Pipsqueak 482 527

Links

Other Pipsqueak family TFs
Other Danio rerio TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSPFOG00000009902 Poecilia formosa ENSPFOG00000009902 I 0.978
ENSXMAG00000005637 Xiphophorus maculatus ENSXMAG00000005637 I 0.978
ENSONIG00000000255 Oreochromis niloticus ENSONIG00000000255 I 0.978
ENSORLG00000000044 Oryzias latipes ENSORLG00000000044 D 0.978
ENSLOCG00000012823 Lepisosteus oculatus ENSLOCG00000012823 I 0.956
ENSAMXG00000021599 Astyanax mexicanus ENSAMXG00000021599 I 0.956
ENSTBEG00000005837 Tupaia belangeri ENSTBEG00000005837 I 0.933
ENSSTOG00000010808 Ictidomys tridecemlineatus ENSSTOG00000010808 I 0.933
ENSTGUG00000009834 Taeniopygia guttata ENSTGUG00000009834 I 0.933
lcor Tetraodon nigroviridis ENSTNIG00000003614 I 0.933
lcor Takifugu rubripes ENSTRUG00000006194 I 0.933
ENSSSCG00000010511 Sus scrofa ENSSSCG00000010511 I 0.933
ENSSHAG00000018667 Sarcophilus harrisii ENSSHAG00000018667 I 0.933
LCOR Pan troglodytes ENSPTRG00000002800 I 0.933
ENSPSIG00000009179 Pelodiscus sinensis ENSPSIG00000009179 I 0.933
ENSPVAG00000003364 Pteropus vampyrus ENSPVAG00000003364 I 0.933
Lcor Rattus norvegicus ENSRNOG00000042679 I 0.933
ENSSARG00000008230 Sorex araneus ENSSARG00000008230 I 0.933
ENSTTRG00000009856 Tursiops truncatus ENSTTRG00000009856 I 0.933
ENSVPAG00000007583 Vicugna pacos ENSVPAG00000007583 I 0.933
Myotis_brandtii_LCOR_10025723 Myotis brandtii Myotis_brandtii_LCOR_10025723 I 0.933
Gfo_R002325 Geospiza fortis Gfo_R002325 I 0.933
Ogr16502 Ophisaurus gracilis Ogr16502 I 0.933
Pvit_17823 Pogona vitticeps Pvit_17823 I 0.933
lcorl Xenopus tropicalis XB-GENE-995017 D 0.933
Tal_R010723 Tyto alba Tal_R010723 I 0.933
ENSP00000360138 Macaca fascicularis ENSP00000360138 I 0.933
ENSBTAP00000005261-D1 Bos grunniens ENSBTAP00000005261-D1 I 0.933
Aan_R012556 Calypte anna Aan_R012556 I 0.933
ENSAMEG00000000186 Ailuropoda melanoleuca ENSAMEG00000000186 I 0.933
Afo_R002709 Aptenodytes forsteri Afo_R002709 I 0.933
Alligator_sinensis_CCG020164.1 Alligator sinensis Alligator_sinensis_CCG020164.1 I 0.933
Cmyd_10003742 Chelonia mydas Cmyd_10003742 I 0.933
Brh_R001506 Buceros rhinoceros Brh_R001506 I 0.933
ENSBTAG00000004029 Bos taurus ENSBTAG00000004029 I 0.933
ENSPCAG00000007084 Procavia capensis ENSPCAG00000007084 I 0.933
ENSMGAG00000009953 Meleagris gallopavo ENSMGAG00000009953 D 0.933
ENSLAFG00000014271 Loxodonta africana ENSLAFG00000014271 I 0.933
ENSCSAG00000006043 Chlorocebus sabaeus ENSCSAG00000006043 I 0.933
ENSMICG00000007572 Microcebus murinus ENSMICG00000007572 I 0.933
ENSMLUG00000000494 Myotis lucifugus ENSMLUG00000000494 I 0.933
ENSECAG00000013517 Equus caballus ENSECAG00000013517 I 0.933
ENSETEG00000015066 Echinops telfairi ENSETEG00000015066 I 0.933
ENSGALG00000023649 Gallus gallus ENSGALG00000023649 I 0.933
ENSFCAG00000028121 Felis catus ENSFCAG00000028121 I 0.933
ENSGGOG00000026110 Gorilla gorilla ENSGGOG00000026110 I 0.933
ENSFALG00000008484 Ficedula albicollis ENSFALG00000008484 I 0.933
ENSMMUG00000010425 Macaca mulatta ENSMMUG00000010425 I 0.933
ENSMODG00000004531 Monodelphis domestica ENSMODG00000004531 I 0.933
ENSCJAG00000016484 Callithrix jacchus ENSCJAG00000016484 I 0.933
ENSCHOG00000001981 Choloepus hoffmanni ENSCHOG00000001981 I 0.933
ENSOPRG00000014745 Ochotona princeps ENSOPRG00000014745 I 0.933
ENSCAFG00000008905 Canis familiaris ENSCAFG00000008905 I 0.933
ENSCPOG00000005739 Cavia porcellus ENSCPOG00000005739 I 0.933
ENSAPLG00000003032 Anas platyrhynchos ENSAPLG00000003032 I 0.933
Lcor Mus musculus ENSMUSG00000025019 I 0.933
ENSNLEG00000013648 Nomascus leucogenys ENSNLEG00000013648 I 0.933
ENSOARG00000008725 Ovis aries ENSOARG00000008725 I 0.933
ENSOGAG00000008137 Otolemur garnettii ENSOGAG00000008137 I 0.933
LCOR Homo sapiens ENSG00000196233 I 0.933
ENSLACG00000001265 Latimeria chalumnae ENSLACG00000001265 I 0.911
ENSACAG00000012432 Anolis carolinensis ENSACAG00000012432 D 0.889
ENSONIG00000018331 Oreochromis niloticus ENSONIG00000018331 I 0.844
ENSTRUG00000008704 Takifugu rubripes ENSTRUG00000008704 I 0.844
LCORL Choloepus hoffmanni ENSCHOG00000006922 D 0.822
Myotis_brandtii_LCORL_10024398 Myotis brandtii Myotis_brandtii_LCORL_10024398 I 0.822
LCORL Tupaia belangeri ENSTBEG00000012926 I 0.822
LCORL Homo sapiens ENSG00000178177 D 0.822
ENSORLG00000007805 Oryzias latipes ENSORLG00000007805 D 0.800
ENSXMAG00000002515 Xiphophorus maculatus ENSXMAG00000002515 I 0.800
ENSPFOG00000013017 Poecilia formosa ENSPFOG00000013017 I 0.800
ENSPMAG00000003112 Petromyzon marinus ENSPMAG00000003112 I 0.800
ENSGMOG00000018278 Gadus morhua ENSGMOG00000018278 I 0.800
ENSGACG00000007469 Gasterosteus aculeatus ENSGACG00000007469 D 0.800