CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lcor
(
Mus musculus
)
Pipsqueak
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF05225 (HTH_psq)
IPR007889
ENSMUSG00000025019
T313582_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables chromatin binding activity. Involved in positive regulation of histone H3-K27 trimethylation. Acts upstream of or within negative regulation of transcription by RNA polymerase II and transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including 1st branchial arch; genitourinary system; long bone epiphysis; nervous system; and sensory organ. Orthologous to human LCOR (ligand dependent nuclear receptor corepressor). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ENSMGAG00000009953
M02433_2.00
Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN
PBM
Weirauch et al.(2014)
pTH8649
1.000
1.000
ENSACAG00000012432
M02430_2.00
Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN
PBM
Weirauch et al.(2014)
pTH9220
0.956
0.956
lcorl
M02438_2.00
Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN
PBM
Weirauch et al.(2014)
pTH8558
0.956
0.956
ENSORLG00000000044
M02434_2.00
Oryzias latipes
CCCAAAWT
AWTTTGGG
PBM
Weirauch et al.(2014)
pTH9275
0.911
0.911
ENSGACG00000007469
M02432_2.00
Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN
PBM
Weirauch et al.(2014)
pTH9179
0.822
0.822
ENSORLG00000007805
M02435_2.00
Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS
PBM
Weirauch et al.(2014)
pTH9277
0.822
0.822
LCORL
M02431_2.00
Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN
PBM
Weirauch et al.(2014)
pTH9253
0.800
0.800
For this family, TFs with SR scores >
0.778
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000067603
Pipsqueak
350
395
NSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKN
ENSMUSP00000126441
Pipsqueak
350
395
NSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKN
Links
Other
Pipsqueak
family TFs
Other
Mus musculus
TFs
75 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy