CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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lcorl
(
Xenopus tropicalis
)
Pipsqueak
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF05225 (HTH_psq)
IPR007889
XB-GENE-995017
T314724_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
lcorl
M02438_2.00
Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN
PBM
Weirauch et al.(2014)
pTH8558
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ENSACAG00000012432
M02430_2.00
Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN
PBM
Weirauch et al.(2014)
pTH9220
0.956
0.956
ENSMGAG00000009953
M02433_2.00
Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN
PBM
Weirauch et al.(2014)
pTH8649
0.956
0.956
ENSORLG00000000044
M02434_2.00
Oryzias latipes
CCCAAAWT
AWTTTGGG
PBM
Weirauch et al.(2014)
pTH9275
0.911
0.911
ENSORLG00000007805
M02435_2.00
Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS
PBM
Weirauch et al.(2014)
pTH9277
0.844
0.844
ENSGACG00000007469
M02432_2.00
Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN
PBM
Weirauch et al.(2014)
pTH9179
0.822
0.822
LCORL
M02431_2.00
Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN
PBM
Weirauch et al.(2014)
pTH9253
0.800
0.800
For this family, TFs with SR scores >
0.778
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02438_2.00
Pipsqueak
51
96
NSEILEEAIAVVMNGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKN
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002940978
Pipsqueak
527
572
NSEILEEAIAVVMNGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKN
Links
Other
Pipsqueak
family TFs
Other
Xenopus tropicalis
TFs
73 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy