CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gmeb2
(
Rattus norvegicus
)
SAND
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01342 (SAND)
IPR000770
ENSRNOG00000013339
T321899_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus. Orthologous to human GMEB2 (glucocorticoid modulatory element binding protein 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gmeb2
M00824_2.00
Mus musculus
NNACGYNN
NNRCGTNN
PBM
Weirauch et al.(2013)
pTH3084
0.994
1.000
GMEB2
M03471_2.00
Homo sapiens
YBACGYAM
KTRCGTVR
SELEX
Jolma et al.(2013)
GMEB2_1
0.994
1.000
GMEB2
M03472_2.00
Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW
SELEX
Jolma et al.(2013)
GMEB2_2
0.994
1.000
GMEB2
M03473_2.00
Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR
SELEX
Jolma et al.(2013)
GMEB2_3
0.994
1.000
GMEB2
M03474_2.00
Homo sapiens
BKACGTAM
KTACGTMV
SELEX
Jolma et al.(2013)
GMEB2_4
0.994
1.000
GMEB2
M05735_2.00
Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV
SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX
0.994
1.000
GMEB2
M05736_2.00
Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV
SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX
0.994
1.000
GMEB2
M02458_2.00
Anolis carolinensis
NNACGYANN
NNTRCGTNN
PBM
Weirauch et al.(2014)
pTH9219
0.992
0.947
GMEB2
M02462_2.00
Meleagris gallopavo
BBACGYH
DRCGTVV
PBM
Weirauch et al.(2014)
pTH9211
0.992
0.933
GMEB1
M02461_2.00
Meleagris gallopavo
NNACGYNNN
NNNRCGTNN
PBM
Weirauch et al.(2014)
pTH8318
0.986
0.747
ENSMODG00000010947
M02463_2.00
Monodelphis domestica
NNRCGYN
NRCGYNN
PBM
Weirauch et al.(2014)
pTH8671
0.986
0.747
GMEB1
M02460_2.00
Homo sapiens
NNVCGYNNN
NNNRCGBNN
PBM
Weirauch et al.(2014)
pTH9026
0.986
0.733
Gmeb1
M00190_2.00
Mus musculus
NNRCGYNNN
NNNRCGYNN
PBM
Badis et al.(2009)
Gmeb1_1745
0.986
0.733
GMEB1
M02465_2.00
Pteropus vampyrus
NBACGYHN
NDRCGTVN
PBM
Weirauch et al.(2014)
pTH9282
0.986
0.733
GMEB1
M05737_2.00
Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM
SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX
0.986
0.733
GMEB1
M05738_2.00
Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM
SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX
0.986
0.733
gmeb1.S
M02469_2.00
Xenopus laevis
NKACGTVY
RBACGTMN
PBM
Weirauch et al.(2014)
pTH9298
0.981
0.707
gmeb1
M02468_2.00
Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN
PBM
Weirauch et al.(2014)
pTH8745
0.981
0.693
ENSCING00000003435
M02459_2.00
Ciona intestinalis
NKACGTMVNN
NNBKACGTMN
PBM
Weirauch et al.(2014)
pTH9356
0.956
0.627
For this family, TFs with SR scores >
0.843
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000018237
SAND
87
162
EAEIVYPITCGDSRANLIWRKFVCPGINVKCVQYDEHVISPKEFVHLAGKSTLKDWKRAIRMNGIMLRKIMDSGEL
ENSRNOP00000049928
SAND
87
162
EAEIVYPITCGDSRANLIWRKFVCPGINVKCVQYDEHVISPKEFVHLAGKSTLKDWKRAIRMNGIMLRKIMDSGEL
Links
Other
SAND
family TFs
Other
Rattus norvegicus
TFs
140 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy