CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_01323
(
Pogona vitticeps
)
SAND
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01342 (SAND)
IPR000770
Pvit_01323
T322174_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GMEB2
M02458_2.00
Anolis carolinensis
NNACGYANN
NNTRCGTNN
PBM
Weirauch et al.(2014)
pTH9219
0.994
1.000
Gmeb2
M00824_2.00
Mus musculus
NNACGYNN
NNRCGTNN
PBM
Weirauch et al.(2013)
pTH3084
0.992
0.947
GMEB2
M03471_2.00
Homo sapiens
YBACGYAM
KTRCGTVR
SELEX
Jolma et al.(2013)
GMEB2_1
0.992
0.947
GMEB2
M03472_2.00
Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW
SELEX
Jolma et al.(2013)
GMEB2_2
0.992
0.947
GMEB2
M03473_2.00
Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR
SELEX
Jolma et al.(2013)
GMEB2_3
0.992
0.947
GMEB2
M03474_2.00
Homo sapiens
BKACGTAM
KTACGTMV
SELEX
Jolma et al.(2013)
GMEB2_4
0.992
0.947
GMEB2
M05735_2.00
Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV
SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX
0.992
0.947
GMEB2
M05736_2.00
Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV
SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX
0.992
0.947
GMEB2
M02462_2.00
Meleagris gallopavo
BBACGYH
DRCGTVV
PBM
Weirauch et al.(2014)
pTH9211
0.991
0.947
GMEB1
M02461_2.00
Meleagris gallopavo
NNACGYNNN
NNNRCGTNN
PBM
Weirauch et al.(2014)
pTH8318
0.987
0.773
ENSMODG00000010947
M02463_2.00
Monodelphis domestica
NNRCGYN
NRCGYNN
PBM
Weirauch et al.(2014)
pTH8671
0.987
0.773
GMEB1
M02460_2.00
Homo sapiens
NNVCGYNNN
NNNRCGBNN
PBM
Weirauch et al.(2014)
pTH9026
0.987
0.760
Gmeb1
M00190_2.00
Mus musculus
NNRCGYNNN
NNNRCGYNN
PBM
Badis et al.(2009)
Gmeb1_1745
0.987
0.760
GMEB1
M02465_2.00
Pteropus vampyrus
NBACGYHN
NDRCGTVN
PBM
Weirauch et al.(2014)
pTH9282
0.987
0.760
GMEB1
M05737_2.00
Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM
SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX
0.987
0.760
GMEB1
M05738_2.00
Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM
SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX
0.987
0.760
gmeb1.S
M02469_2.00
Xenopus laevis
NKACGTVY
RBACGTMN
PBM
Weirauch et al.(2014)
pTH9298
0.983
0.733
gmeb1
M02468_2.00
Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN
PBM
Weirauch et al.(2014)
pTH8745
0.983
0.720
ENSCING00000003435
M02459_2.00
Ciona intestinalis
NKACGTMVNN
NNBKACGTMN
PBM
Weirauch et al.(2014)
pTH9356
0.954
0.627
For this family, TFs with SR scores >
0.843
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_01323
SAND
88
163
EAEIVYPITCGDSKANLIWRKFVCPGINVKCVQYDNHLISPKEFVHLAGKSTLKDWKRAIRMNGIMLRKIMDSGKL
Links
Other
SAND
family TFs
Other
Pogona vitticeps
TFs
139 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy