Phatr3_J45662 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J45662 T331919_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NCU02819
M02490_2.00
Neurospora crassa
NNHNNNNNRN

NYNNNNNDNN
PBM
Weirauch et al.(2014)
pTH9672
0.425 0.290
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J45662.p1 Sox 67 147

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NCU02819 Neurospora crassa NCU02819 D 0.425
PV11_09703 Exophiala sideris PV11_09703 I 0.453
PV10_01993 Exophiala mesophila PV10_01993 I 0.426
PV09_06887 Verruconis gallopava PV09_06887 I 0.415
PV08_04655 Exophiala spinifera PV08_04655 I 0.453
PV07_09313 Cladophialophora immunda PV07_09313 I 0.426
PV06_04154 Exophiala oligosperma PV06_04154 I 0.453
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.424
POPTR_0017s11460 Populus trichocarpa POPTR_0017s11460 I 0.424
PODANS_1_7390 Podospora anserina PODANS_1_7390 I 0.423
Phatr3_J11888 Phaeodactylum tricornutum Phatr3_J11888 I 0.439
OSTLU_31946 Ostreococcus lucimarinus OSTLU_31946 I 0.457
OIDMADRAFT_143526 Oidiodendron maius OIDMADRAFT_143526 I 0.453
OCS_01486 Ophiocordyceps sinensis OCS_01486 I 0.423
NEUTE1DRAFT_106544 Neurospora tetrasperma NEUTE1DRAFT_106544 I 0.425
S40288_09735 Stachybotrys chartarum S40288_09735 I 0.429
SBOR_0403 Sclerotinia borealis SBOR_0403 I 0.482
SapurV1A.0447s0140 Salix purpurea SapurV1A.0447s0140 I 0.424
gw1.6.1665.1 Ostreococcus RCC809 gw1.6.1665.1 I 0.419
estExt_fgenesh3_kg.C_40082 Neurospora discreta estExt_fgenesh3_kg.C_40082 I 0.425
Z519_04692 Cladophialophora bantiana Z519_04692 I 0.426
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.453
Z517_02317 Fonsecaea pedrosoi Z517_02317 I 0.426
X797_001988 Metarhizium robertsii X797_001988 I 0.425
VDBG_04589 Verticillium alfalfae VDBG_04589 I 0.423
VDAG_09161 Verticillium dahliae VDAG_09161 I 0.423
VDAG_04140 Verticillium dahliae VDAG_04140 I 0.423
V499_08602 Pseudogymnoascus pannorum V499_08602 I 0.421
THITE_2121767 Thielavia terrestris THITE_2121767 I 0.433
SS1G_04584 Sclerotinia sclerotiorum SS1G_04584 I 0.482
SMAC_00615 Sordaria macrospora SMAC_00615 I 0.425
MYCTH_2294934 Myceliophthora thermophila MYCTH_2294934 I 0.433
MGG_01641 Magnaporthe oryzae MGG_01641 I 0.423
CTHT_0053790 Chaetomium thermophilum CTHT_0053790 I 0.425
CSUB01_00364 Colletotrichum sublineola CSUB01_00364 I 0.423
CPUR_04901 Claviceps purpurea CPUR_04901 I 0.450
CH063_04081 Colletotrichum higginsianum CH063_04081 I 0.423
CGGC5_9539 Colletotrichum gloeosporioides CGGC5_9539 I 0.423
CFIO01_13531 Colletotrichum fioriniae CFIO01_13531 I 0.423
BGHDH14_bgh04339 Blumeria graminis BGHDH14_bgh04339 I 0.444
Bcin01g08840 Botrytis cinerea Bcin01g08840 I 0.482
AUEXF2481DRAFT_32739 Aureobasidium subglaciale AUEXF2481DRAFT_32739 I 0.426
ACRE_011600 Acremonium chrysogenum ACRE_011600 I 0.422
A1O9_00742 Exophiala aquamarina A1O9_00742 I 0.453
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.424
A1O5_06047 Cladophialophora psammophila A1O5_06047 I 0.426
A1O3_08778 Capronia epimyces A1O3_08778 I 0.453
A1O1_01197 Capronia coronata A1O1_01197 I 0.453
VDBG_04589 Verticillium albo atrum VDBG_04589 I 0.423
EV44_g2383 Erysiphe necator EV44_g2383 I 0.455
FFUJ_02729 Fusarium fujikuroi FFUJ_02729 I 0.429
FPSE_02664 Fusarium pseudograminearum FPSE_02664 I 0.429
M438DRAFT_338286 Aureobasidium pullulans M438DRAFT_338286 I 0.426
MANI_030028 Metarhizium anisopliae MANI_030028 I 0.425
MAPG_06737 Magnaporthe poae MAPG_06737 I 0.423
MBM_02410 Marssonina brunnea MBM_02410 I 0.482
M437DRAFT_15090 Aureobasidium melanogenum M437DRAFT_15090 I 0.426
HMPREF1541_06859 Cyphellophora europaea HMPREF1541_06859 I 0.453
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.453
GMDG_05273 Pseudogymnoascus destructans GMDG_05273 I 0.421
GLRG_01394 Colletotrichum graminicola GLRG_01394 I 0.423
GGTG_01518 Gaeumannomyces graminis GGTG_01518 I 0.423
G647_10093 Cladophialophora carrionii G647_10093 I 0.424
M7I_1578 Glarea lozoyensis M7I_1578 I 0.490
gw1.30.62.1 Fragilariopsis cylindrus gw1.30.62.1 N 0.441
gw1.21.309.1 Fragilariopsis cylindrus gw1.21.309.1 N 0.444
Phatr3_EG02634 Phaeodactylum tricornutum Phatr3_EG02634 N 0.607
Phatr3_J34626 Phaeodactylum tricornutum Phatr3_J34626 N 0.632
Phatr3_J39880 Phaeodactylum tricornutum Phatr3_J39880 N 0.632
Phatr3_J43419 Phaeodactylum tricornutum Phatr3_J43419 N 0.448
RSKR_0000269500 Rhabditophanes kr3021 RSKR_0000269500 N 0.415