CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Phatr3_J45662
(
Phaeodactylum tricornutum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Phatr3_J45662
T331919_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU02819
M02490_2.00
Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN
PBM
Weirauch et al.(2014)
pTH9672
0.425
0.290
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Phatr3_J45662.p1
Sox
67
147
PKRPLSAYNIFFKKERQRILAETPTRPEGKPRRSHGKIGFADLARRIAGNWNSIDEDRKAAFEKLAATDKKRYLGEMEVWK
Links
Other
Sox
family TFs
Other
Phaeodactylum tricornutum
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Phatr3_J34626
Phaeodactylum tricornutum
Phatr3_J34626
N
0.632
Phatr3_J39880
Phaeodactylum tricornutum
Phatr3_J39880
N
0.632
Phatr3_EG02634
Phaeodactylum tricornutum
Phatr3_EG02634
N
0.607
M7I_1578
Glarea lozoyensis
M7I_1578
I
0.490
SS1G_04584
Sclerotinia sclerotiorum
SS1G_04584
I
0.482
MBM_02410
Marssonina brunnea
MBM_02410
I
0.482
Bcin01g08840
Botrytis cinerea
Bcin01g08840
I
0.482
SBOR_0403
Sclerotinia borealis
SBOR_0403
I
0.482
OSTLU_31946
Ostreococcus lucimarinus
OSTLU_31946
I
0.457
EV44_g2383
Erysiphe necator
EV44_g2383
I
0.455
HMPREF1541_06859
Cyphellophora europaea
HMPREF1541_06859
I
0.453
HMPREF1120_00213
Exophiala dermatitidis
HMPREF1120_00213
I
0.453
PV06_04154
Exophiala oligosperma
PV06_04154
I
0.453
PV11_09703
Exophiala sideris
PV11_09703
I
0.453
PV08_04655
Exophiala spinifera
PV08_04655
I
0.453
Z518_04911
Rhinocladiella mackenziei
Z518_04911
I
0.453
OIDMADRAFT_143526
Oidiodendron maius
OIDMADRAFT_143526
I
0.453
A1O3_08778
Capronia epimyces
A1O3_08778
I
0.453
A1O1_01197
Capronia coronata
A1O1_01197
I
0.453
A1O9_00742
Exophiala aquamarina
A1O9_00742
I
0.453
CPUR_04901
Claviceps purpurea
CPUR_04901
I
0.450
Phatr3_J43419
Phaeodactylum tricornutum
Phatr3_J43419
N
0.448
BGHDH14_bgh04339
Blumeria graminis
BGHDH14_bgh04339
I
0.444
gw1.21.309.1
Fragilariopsis cylindrus
gw1.21.309.1
N
0.444
gw1.30.62.1
Fragilariopsis cylindrus
gw1.30.62.1
N
0.441
Phatr3_J11888
Phaeodactylum tricornutum
Phatr3_J11888
I
0.439
THITE_2121767
Thielavia terrestris
THITE_2121767
I
0.433
MYCTH_2294934
Myceliophthora thermophila
MYCTH_2294934
I
0.433
FFUJ_02729
Fusarium fujikuroi
FFUJ_02729
I
0.429
S40288_09735
Stachybotrys chartarum
S40288_09735
I
0.429
FPSE_02664
Fusarium pseudograminearum
FPSE_02664
I
0.429
M438DRAFT_338286
Aureobasidium pullulans
M438DRAFT_338286
I
0.426
Z519_04692
Cladophialophora bantiana
Z519_04692
I
0.426
A1O5_06047
Cladophialophora psammophila
A1O5_06047
I
0.426
Z517_02317
Fonsecaea pedrosoi
Z517_02317
I
0.426
M437DRAFT_15090
Aureobasidium melanogenum
M437DRAFT_15090
I
0.426
PV10_01993
Exophiala mesophila
PV10_01993
I
0.426
AUEXF2481DRAFT_32739
Aureobasidium subglaciale
AUEXF2481DRAFT_32739
I
0.426
PV07_09313
Cladophialophora immunda
PV07_09313
I
0.426
NCU02819
Neurospora crassa
NCU02819
D
0.425
SMAC_00615
Sordaria macrospora
SMAC_00615
I
0.425
NEUTE1DRAFT_106544
Neurospora tetrasperma
NEUTE1DRAFT_106544
I
0.425
X797_001988
Metarhizium robertsii
X797_001988
I
0.425
estExt_fgenesh3_kg.C_40082
Neurospora discreta
estExt_fgenesh3_kg.C_40082
I
0.425
CTHT_0053790
Chaetomium thermophilum
CTHT_0053790
I
0.425
MANI_030028
Metarhizium anisopliae
MANI_030028
I
0.425
A1O7_01726
Cladophialophora yegresii
A1O7_01726
I
0.424
SapurV1A.0447s0140
Salix purpurea
SapurV1A.0447s0140
I
0.424
POPTR_0017s11460
Populus trichocarpa
POPTR_0017s11460
I
0.424
G647_10093
Cladophialophora carrionii
G647_10093
I
0.424
PV05_09944
Exophiala xenobiotica
PV05_09944
I
0.424
CH063_04081
Colletotrichum higginsianum
CH063_04081
I
0.423
MGG_01641
Magnaporthe oryzae
MGG_01641
I
0.423
MAPG_06737
Magnaporthe poae
MAPG_06737
I
0.423
GLRG_01394
Colletotrichum graminicola
GLRG_01394
I
0.423
GGTG_01518
Gaeumannomyces graminis
GGTG_01518
I
0.423
OCS_01486
Ophiocordyceps sinensis
OCS_01486
I
0.423
CSUB01_00364
Colletotrichum sublineola
CSUB01_00364
I
0.423
VDBG_04589
Verticillium alfalfae
VDBG_04589
I
0.423
CFIO01_13531
Colletotrichum fioriniae
CFIO01_13531
I
0.423
PODANS_1_7390
Podospora anserina
PODANS_1_7390
I
0.423
VDBG_04589
Verticillium albo atrum
VDBG_04589
I
0.423
CGGC5_9539
Colletotrichum gloeosporioides
CGGC5_9539
I
0.423
VDAG_09161
Verticillium dahliae
VDAG_09161
I
0.423
VDAG_04140
Verticillium dahliae
VDAG_04140
I
0.423
ACRE_011600
Acremonium chrysogenum
ACRE_011600
I
0.422
GMDG_05273
Pseudogymnoascus destructans
GMDG_05273
I
0.421
V499_08602
Pseudogymnoascus pannorum
V499_08602
I
0.421
gw1.6.1665.1
Ostreococcus RCC809
gw1.6.1665.1
I
0.419
RSKR_0000269500
Rhabditophanes kr3021
RSKR_0000269500
N
0.415
PV09_06887
Verruconis gallopava
PV09_06887
I
0.415