POPTR_0004s09080 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0004s09080 T332123_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s09080.1 Sox 40 108

Links

Other Sox family TFs
Other Populus trichocarpa TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_045462 Theobroma cacao TCM_045462 N 0.658
SapurV1A.0230s0030 Salix purpurea SapurV1A.0230s0030 N 0.654
SapurV1A.0728s0020 Salix purpurea SapurV1A.0728s0020 N 0.654
PK10571.1 Cannabis sativa PK10571.1 N 0.629
evm.TU.supercontig_116.14 Carica papaya evm.TU.supercontig_116.14 N 0.627
28748.m000216 Ricinus communis 28748.m000216 N 0.627
Gorai.010G218300 Gossypium raimondii Gorai.010G218300 N 0.621
PRUPE_ppa003531mg Prunus persica PRUPE_ppa003531mg N 0.602
Pm014490 Prunus mume Pm014490 N 0.602
orange1.1g043878m.g Citrus sinensis orange1.1g043878m.g N 0.597
Ciclev10011294m.g Citrus clementina Ciclev10011294m.g N 0.597
Solyc03g043600.1 Solanum lycopersicum Solyc03g043600.1 N 0.592
PGSC0003DMG400016690 Solanum tuberosum PGSC0003DMG400016690 N 0.592
VIT_14s0006g01840 Vitis vinifera VIT_14s0006g01840 N 0.583
MDP0000237182 Malus domestica MDP0000237182 N 0.569
GLYMA10G34561 Glycine max GLYMA10G34561 N 0.535