fgenesh2_pg.9_#_75 (Fragilariopsis cylindrus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pg.9_#_75 T334136_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.9_#_75 Sox 34 65
fgenesh2_pg.9_#_75 Sox 76 132

Links

Other Sox family TFs
Other Fragilariopsis cylindrus TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Phatr3_J50240 Phaeodactylum tricornutum Phatr3_J50240 N 0.580
Phatr3_J33840 Phaeodactylum tricornutum Phatr3_J33840 N 0.491
fgenesh2_pg.4_#_1036 Fragilariopsis cylindrus fgenesh2_pg.4_#_1036 N 0.463
fgenesh2_pg.7_#_214 Fragilariopsis cylindrus fgenesh2_pg.7_#_214 N 0.442
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.439
Phatr3_J50336 Phaeodactylum tricornutum Phatr3_J50336 N 0.436
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.427
Phatr3_J49937 Phaeodactylum tricornutum Phatr3_J49937 N 0.424
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.421
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N 0.421