CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ORGLA07G0028600
(
Oryza glaberrima
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
ORGLA07G0028600
T344191_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP24
M02499_2.00
Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN
PBM
Weirauch et al.(2014)
pTH7337
0.952
0.289
TCP24
M07272_2.00
Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP24_colamp_a
0.952
0.289
TCP24
M07273_2.00
Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
TCP24_col
0.952
0.289
TCP24
M02506_2.00
Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN
PBM
Weirauch et al.(2014)
pTH9227
0.952
0.284
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ORGLA07G0028600.1
TCP
59
199
SGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLDTASFPTHPASSAAVAAAAAPPLPHAEREQQQQLTKSGCSSTSETSKGSVLSLSRSESRVKARERARERSSAAAAAA
ORGLA07G0028600.1
TCP
317
411
AEHHAEMTHYSFDHFMPVHAAAAAAAAASTPAGGDYNLNFSMSSGLVGVHSRGTLQSNSQSHLSSHHHHHHQQQQQQQQLQRLSAPLDAPNIPFL
Links
Other
TCP
family TFs
Other
Oryza glaberrima
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy