AMTR_s00107p00095070 (Amborella trichopoda)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AMTR_s00107p00095070 T000390_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.716 0.760
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.716 0.760
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.698 0.780
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.698 0.780
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.684 0.800
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.678 0.800
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.678 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN00300 AP2 137 188

Links

Other AP2 family TFs
Other Amborella trichopoda TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28206.m000104 Ricinus communis 28206.m000104 I 0.688
29908.m006005 Ricinus communis 29908.m006005 I 0.684
AMTR_s00009p00268560 Amborella trichopoda AMTR_s00009p00268560 I 0.691
AMTR_s00010p00194910 Amborella trichopoda AMTR_s00010p00194910 I 0.684
AMTR_s00089p00102760 Amborella trichopoda AMTR_s00089p00102760 I 0.678
Aquca_014_00591 Aquilegia coerulea Aquca_014_00591 I 0.688
Aquca_014_00592 Aquilegia coerulea Aquca_014_00592 I 0.684
Aquca_034_00155 Aquilegia coerulea Aquca_034_00155 I 0.680
RAP2-13 Arabidopsis thaliana AT1G22190 I 0.684
ERF055 Arabidopsis thaliana AT1G36060 D 0.678
RAP2-4 Arabidopsis thaliana AT1G78080 D 0.684
ERF054 Arabidopsis thaliana AT4G28140 D 0.698
ERF060 Arabidopsis thaliana AT4G39780 I 0.680
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.716
Bo1g002840 Brassica oleracea Bo1g002840 I 0.677
Bo3g100470 Brassica oleracea Bo3g100470 I 0.690
Bo3g152610 Brassica oleracea Bo3g152610 I 0.699
Bo5g037400 Brassica oleracea Bo5g037400 I 0.684
Bo5g069450 Brassica oleracea Bo5g069450 I 0.678
Bo6g081850 Brassica oleracea Bo6g081850 I 0.678
Bo6g121730 Brassica oleracea Bo6g121730 I 0.684
Bo7g111910 Brassica oleracea Bo7g111910 I 0.678
Bo7g119000 Brassica oleracea Bo7g119000 I 0.687
Bo8g054130 Brassica oleracea Bo8g054130 I 0.698
Bostr.0568s0279 Boechera stricta Bostr.0568s0279 I 0.689
Bostr.12659s0070 Boechera stricta Bostr.12659s0070 I 0.684
Bostr.20129s0241 Boechera stricta Bostr.20129s0241 I 0.684
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I 0.678
Bostr.25542s0167 Boechera stricta Bostr.25542s0167 I 0.680
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.698
Bra008343 Brassica rapa Bra008343 I 0.684
Bra010383 Brassica rapa Bra010383 I 0.698
Bra015634 Brassica rapa Bra015634 I 0.684
Bra017879 Brassica rapa Bra017879 I 0.687
Bra024222 Brassica rapa Bra024222 I 0.678
Bra026280 Brassica rapa Bra026280 I 0.683
Bra031371 Brassica rapa Bra031371 I 0.684
Bra040381 Brassica rapa Bra040381 I 0.678
Cagra.0096s0029 Capsella grandiflora Cagra.0096s0029 I 0.684
Cagra.0917s0073 Capsella grandiflora Cagra.0917s0073 I 0.689
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I 0.698
Carubv10005203m.g Capsella rubella Carubv10005203m.g I 0.698
Carubv10012538m.g Capsella rubella Carubv10012538m.g I 0.678
Carubv10020567m.g Capsella rubella Carubv10020567m.g I 0.684
Carubv10026925m.g Capsella rubella Carubv10026925m.g I 0.689
cassava10153.m1 Manihot esculenta cassava10153.m1 I 0.684
cassava23925.valid.m1 Manihot esculenta cassava23925.valid.m1 I 0.688
cassava31195.valid.m1 Manihot esculenta cassava31195.valid.m1 I 0.688
cassava36179.valid.m1 Manihot esculenta cassava36179.valid.m1 I 0.680
Ca_09578 Cicer arietinum Ca_09578 I 0.682
Ca_23799 Cicer arietinum Ca_23799 I 0.687
chr2.CM0608.10.nd Lotus japonicus chr2.CM0608.10.nd I 0.687
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I 0.702
Ciclev10001563m.g Citrus clementina Ciclev10001563m.g I 0.684
Ciclev10025961m.g Citrus clementina Ciclev10025961m.g I 0.685
Cla014376 Citrullus lanatus Cla014376 I 0.684
Cla022420 Citrullus lanatus Cla022420 I 0.684
Cucsa.104510 Cucumis sativus Cucsa.104510 I 0.682
Cucsa.154520 Cucumis sativus Cucsa.154520 I 0.684
Eucgr.F00497 Eucalyptus grandis Eucgr.F00497 I 0.677
Eucgr.F02440 Eucalyptus grandis Eucgr.F02440 I 0.691
Eucgr.I00422 Eucalyptus grandis Eucgr.I00422 I 0.680
Eucgr.L03532 Eucalyptus grandis Eucgr.L03532 I 0.680
evm.TU.supercontig_36.112 Carica papaya evm.TU.supercontig_36.112 I 0.684
evm.TU.supercontig_996.1 Carica papaya evm.TU.supercontig_996.1 I 0.684
e_gw1.187.17.1 Physcomitrella patens e_gw1.187.17.1 I 0.681
e_gw1.335.26.1 Physcomitrella patens e_gw1.335.26.1 I 0.686
fgenesh2_kg.1__2408__AT1G22190.1 Arabidopsis lyrata fgenesh2_kg.1__2408__AT1G22190.1 I 0.684
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I 0.678
RAP2.4 Arabidopsis lyrata fgenesh2_kg.2__2105__AT1G78080.1 I 0.684
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.698
fgenesh2_kg.7__195__AT4G39780.1 Arabidopsis lyrata fgenesh2_kg.7__195__AT4G39780.1 I 0.680
gene16350-v1.0-hybrid Fragaria vesca gene16350-v1.0-hybrid I 0.688
gene22114-v1.0-hybrid Fragaria vesca gene22114-v1.0-hybrid I 0.684
GLYMA04G11290 Glycine max GLYMA04G11290 I 0.684
GLYMA06G11010 Glycine max GLYMA06G11010 I 0.684
GLYMA13G01930 Glycine max GLYMA13G01930 I 0.677
GLYMA14G34590 Glycine max GLYMA14G34590 I 0.677
Gorai.003G038200 Gossypium raimondii Gorai.003G038200 I 0.688
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I 0.689
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I 0.681
Gorai.008G253900 Gossypium raimondii Gorai.008G253900 I 0.693
Gorai.009G238800 Gossypium raimondii Gorai.009G238800 I 0.684
Gorai.010G043200 Gossypium raimondii Gorai.010G043200 I 0.684
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.703
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I 0.678
GSMUA_Achr10G30440_001 Musa acuminata GSMUA_Achr10G30440_001 I 0.684
GSMUA_Achr1G27990_001 Musa acuminata GSMUA_Achr1G27990_001 N 0.701
GSMUA_Achr9G12950_001 Musa acuminata GSMUA_Achr9G12950_001 I 0.678
GSMUA_AchrUn_randomG20840_001 Musa acuminata GSMUA_AchrUn_randomG20840_001 I 0.684
LjSGA_026196.1 Lotus japonicus LjSGA_026196.1 I 0.684
Lus10000582.g Linum usitatissimum Lus10000582.g I 0.679
Lus10016669.g Linum usitatissimum Lus10016669.g I 0.677
Lus10016801.g Linum usitatissimum Lus10016801.g I 0.682
Lus10019665.g Linum usitatissimum Lus10019665.g I 0.679
Lus10020913.g Linum usitatissimum Lus10020913.g I 0.684
Lus10033463.g Linum usitatissimum Lus10033463.g I 0.684
MDP0000313476 Malus domestica MDP0000313476 I 0.684
mgf002388m Mimulus guttatus mgf002388m I 0.691
mgf016403m Mimulus guttatus mgf016403m I 0.689
mgf023311m Mimulus guttatus mgf023311m I 0.688
MTR_3g074130 Medicago truncatula MTR_3g074130 I 0.684
MTR_5g062700 Medicago truncatula MTR_5g062700 I 0.683
MTR_8g090350 Medicago truncatula MTR_8g090350 I 0.682
orange1.1g017798m.g Citrus sinensis orange1.1g017798m.g I 0.684
orange1.1g018103m.g Citrus sinensis orange1.1g018103m.g I 0.685
Pavir.J13316 Panicum virgatum Pavir.J13316 I 0.685
PGSC0003DMG400008538 Solanum tuberosum PGSC0003DMG400008538 I 0.688
PGSC0003DMG400020625 Solanum tuberosum PGSC0003DMG400020625 I 0.688
PK18885.1 Cannabis sativa PK18885.1 I 0.688
PK27482.1 Cannabis sativa PK27482.1 I 0.691
Pm002052 Prunus mume Pm002052 I 0.684
Pm004824 Prunus mume Pm004824 I 0.684
POPTR_0002s09480 Populus trichocarpa POPTR_0002s09480 I 0.691
POPTR_0005s07900 Populus trichocarpa POPTR_0005s07900 I 0.682
POPTR_0005s16690 Populus trichocarpa POPTR_0005s16690 I 0.684
POPTR_0007s05690 Populus trichocarpa POPTR_0007s05690 I 0.688
PRUPE_ppa007193mg Prunus persica PRUPE_ppa007193mg I 0.684
PRUPE_ppa008234mg Prunus persica PRUPE_ppa008234mg I 0.684
PRUPE_ppa020676mg Prunus persica PRUPE_ppa020676mg I 0.684
SapurV1A.0010s0170 Salix purpurea SapurV1A.0010s0170 I 0.691
SapurV1A.0075s0120 Salix purpurea SapurV1A.0075s0120 I 0.688
SapurV1A.0335s0040 Salix purpurea SapurV1A.0335s0040 I 0.680
SapurV1A.0684s0120 Salix purpurea SapurV1A.0684s0120 I 0.688
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.716
SELMODRAFT_104980 Selaginella moellendorffii SELMODRAFT_104980 I 0.687
SELMODRAFT_73149 Selaginella moellendorffii SELMODRAFT_73149 I 0.682
Solyc04g054910.2 Solanum lycopersicum Solyc04g054910.2 I 0.688
Solyc12g056980.1 Solanum lycopersicum Solyc12g056980.1 I 0.688
TCM_001147 Theobroma cacao TCM_001147 I 0.688
TCM_034939 Theobroma cacao TCM_034939 I 0.684
Thhalv10008326m.g Eutrema salsugineum Thhalv10008326m.g I 0.684
Thhalv10018771m.g Eutrema salsugineum Thhalv10018771m.g I 0.684
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I 0.700
Thhalv10025958m.g Eutrema salsugineum Thhalv10025958m.g I 0.687
VIT_18s0001g05250 Vitis vinifera VIT_18s0001g05250 I 0.684
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.721