PGSC0003DMG400012524 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400012524 T004393_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.734 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.734 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.734 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.734 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.734 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.734 0.760
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.734 0.800
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.734 0.800
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.734 0.800
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.734 0.800
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.712 0.760
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.704 0.780
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.704 0.780
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.699 0.720
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.699 0.720
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.698 0.780
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.698 0.780
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.698 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400032621 AP2 49 100

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC194965.4_FG004 Zea mays AC194965.4_FG004 N
GATA23 Arabidopsis thaliana AT5G26930 N
BGIOSGA018779 Oryza indica BGIOSGA018779 N
Bra009926 Brassica rapa Bra009926 N
BRADI2G12590 Brachypodium distachyon BRADI2G12590 N
BRADI2G35057 Brachypodium distachyon BRADI2G35057 N
cassava16506.m1 Manihot esculenta cassava16506.m1 N
Eucgr.H01071 Eucalyptus grandis Eucgr.H01071 N
GRMZM2G052616 Zea mays GRMZM2G052616 N
GRMZM2G104390 Zea mays GRMZM2G104390 N
LPERR01G13070 Leersia perrieri LPERR01G13070 N
OB01G24090 Oryza brachyantha OB01G24090 N
OBART01G14380 Oryza barthii OBART01G14380 N
OBART05G03900 Oryza barthii OBART05G03900 N
OGLUM01G16180 Oryza glumaepatula OGLUM01G16180 N
OLONG_020882 Oryza longistaminata OLONG_020882 N
ONIVA04G04160 Oryza nivara ONIVA04G04160 N
OPUNC01G14080 Oryza punctata OPUNC01G14080 N
OPUNC05G03600 Oryza punctata OPUNC05G03600 N
ORGLA01G0118700 Oryza glaberrima ORGLA01G0118700 N
ORGLA05G0036200 Oryza glaberrima ORGLA05G0036200 N
ORUFI01G16060 Oryza rufipogon ORUFI01G16060 N
OS01G0343300 Oryza sativa OS01G0343300 N
OS05G0155400 Oryza sativa OS05G0155400 N
Pavir.Ea01306 Panicum virgatum Pavir.Ea01306 N
Pavir.Eb02364 Panicum virgatum Pavir.Eb02364 N
Pavir.J31164 Panicum virgatum Pavir.J31164 N
Pavir.J34225 Panicum virgatum Pavir.J34225 N
Sb03g013700 Sorghum bicolor Sb03g013700 N
Sb09g004315 Sorghum bicolor Sb09g004315 N
Si004417m.g Setaria italica Si004417m.g N
Si011269m.g Setaria italica Si011269m.g N