ORUFI12G20600 (Oryza rufipogon)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ORUFI12G20600 T043143_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.911 0.920
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.898 0.900
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.898 0.900
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.871 0.920
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.871 0.920
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.871 0.920
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.871 0.920
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.871 0.920
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.871 0.920
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.868 0.900
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.868 0.900
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.868 0.900
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.860 0.880
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.854 0.640
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.854 0.600
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI12G20600.1 bHLH 268 319

Links

Other bHLH family TFs
Other Oryza rufipogon TFs

491 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004749 Ricinus communis 29929.m004749 I
Aquca_011_00323 Aquilegia coerulea Aquca_011_00323 I
AtMYB40 Arabidopsis thaliana AT5G14340 D
MYB43 Arabidopsis thaliana AT5G16600 D
Bo3g009730 Brassica oleracea Bo3g009730 I
Bo9g166000 Brassica oleracea Bo9g166000 I
Bostr.2902s0170 Boechera stricta Bostr.2902s0170 I
Bostr.2902s0397 Boechera stricta Bostr.2902s0397 I
Bra006249 Brassica rapa Bra006249 I
Bra008764 Brassica rapa Bra008764 I
Cagra.0434s0026 Capsella grandiflora Cagra.0434s0026 I
Cagra.3166s0041 Capsella grandiflora Cagra.3166s0041 I
Carubv10001378m.g Capsella rubella Carubv10001378m.g I
cassava15064.m1 Manihot esculenta cassava15064.m1 I
cassava17364.m1 Manihot esculenta cassava17364.m1 I
cassava3745.m1 Manihot esculenta cassava3745.m1 I
Ca_19393 Cicer arietinum Ca_19393 I
Ciclev10017764m.g Citrus clementina Ciclev10017764m.g I
Cla004104 Citrullus lanatus Cla004104 I
Cucsa.156340 Cucumis sativus Cucsa.156340 I
Eucgr.I01698 Eucalyptus grandis Eucgr.I01698 I
Eucgr.J02279 Eucalyptus grandis Eucgr.J02279 I
evm.TU.supercontig_1097.3 Carica papaya evm.TU.supercontig_1097.3 I
gene28021-v1.0-hybrid Fragaria vesca gene28021-v1.0-hybrid I
GLYMA05G06410 Glycine max GLYMA05G06410 I
GLYMA16G06900 Glycine max GLYMA16G06900 I
GLYMA19G07830 Glycine max GLYMA19G07830 I
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I
Gorai.006G037500 Gossypium raimondii Gorai.006G037500 I
Gorai.007G074500 Gossypium raimondii Gorai.007G074500 I
Lus10014569.g Linum usitatissimum Lus10014569.g I
Lus10032117.g Linum usitatissimum Lus10032117.g I
MDP0000241111 Malus domestica MDP0000241111 I
MDP0000303239 Malus domestica MDP0000303239 I
mgf018940m Mimulus guttatus mgf018940m I
PGSC0003DMG400011976 Solanum tuberosum PGSC0003DMG400011976 I
PGSC0003DMG400012648 Solanum tuberosum PGSC0003DMG400012648 I
Pm015564 Prunus mume Pm015564 I
POPTR_0001s36220 Populus trichocarpa POPTR_0001s36220 I
PRUPE_ppa026877mg Prunus persica PRUPE_ppa026877mg I
SapurV1A.0136s0070 Salix purpurea SapurV1A.0136s0070 I
MYB43 Arabidopsis lyrata scaffold_601700.1 I
Solyc02g093740.2 Solanum lycopersicum Solyc02g093740.2 I
Solyc05g014290.2 Solanum lycopersicum Solyc05g014290.2 I
TCM_017051 Theobroma cacao TCM_017051 I
Thhalv10014425m.g Eutrema salsugineum Thhalv10014425m.g I
AtMYB40 Vitis vinifera VIT_14s0219g00050 I