Bostr.10273s0474 (Boechera stricta)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Bostr.10273s0474 T049057_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.914 1.000
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.914 0.961
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.902 0.941
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.902 0.922
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.902 0.922
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.902 0.882
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.888 0.922
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.875 0.863
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.875 0.863
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.864 0.824
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.864 0.804
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.864 0.804
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.842 0.745
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.10273s0474.1.p bHLH 277 327

Links

Other bHLH family TFs
Other Boechera stricta TFs

901 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29729.m002335 Ricinus communis 29729.m002335 I
29957.m001411 Ricinus communis 29957.m001411 I
30169.m006340 Ricinus communis 30169.m006340 I
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I
LBD13 Arabidopsis thaliana AT2G30340 D
LBD15 Arabidopsis thaliana AT2G40470 I
BGIOSGA004719 Oryza indica BGIOSGA004719 I
BGIOSGA018747 Oryza indica BGIOSGA018747 I
Bo3g024350 Brassica oleracea Bo3g024350 I
Bo3g034980 Brassica oleracea Bo3g034980 I
Bo4g012620 Brassica oleracea Bo4g012620 I
Bo4g059520 Brassica oleracea Bo4g059520 I
Bo4g172950 Brassica oleracea Bo4g172950 I
Bo4g190140 Brassica oleracea Bo4g190140 I
Bo4g190210 Brassica oleracea Bo4g190210 I
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I
Bra000188 Brassica rapa Bra000188 I
Bra004572 Brassica rapa Bra004572 I
Bra016992 Brassica rapa Bra016992 I
Bra018320 Brassica rapa Bra018320 I
Bra021627 Brassica rapa Bra021627 I
Bra022780 Brassica rapa Bra022780 I
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I
Carubv10024002m.g Capsella rubella Carubv10024002m.g I
Carubv10024870m.g Capsella rubella Carubv10024870m.g I
cassava15554.m1 Manihot esculenta cassava15554.m1 I
cassava20471.m1 Manihot esculenta cassava20471.m1 I
cassava20848.m1 Manihot esculenta cassava20848.m1 I
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I
cassava31953.m1 Manihot esculenta cassava31953.m1 I
Ca_04126 Cicer arietinum Ca_04126 I
Ca_12420 Cicer arietinum Ca_12420 I
Ca_15642 Cicer arietinum Ca_15642 I
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I
Cla007391 Citrullus lanatus Cla007391 I
Cla009336 Citrullus lanatus Cla009336 I
Cla013678 Citrullus lanatus Cla013678 I
Cucsa.118370 Cucumis sativus Cucsa.118370 I
Cucsa.144080 Cucumis sativus Cucsa.144080 I
Cucsa.326100 Cucumis sativus Cucsa.326100 I
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I
F775_25790 Aegilops tauschii F775_25790 I
F775_52636 Aegilops tauschii F775_52636 I
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I
GLYMA02G40080 Glycine max GLYMA02G40080 I
GLYMA04G39830 Glycine max GLYMA04G39830 I
GLYMA06G15050 Glycine max GLYMA06G15050 I
GLYMA14G38280 Glycine max GLYMA14G38280 I
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I
GRMZM2G092517 Zea mays GRMZM2G092517 I
GRMZM5G868471 Zea mays GRMZM5G868471 I
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I
LPERR01G30700 Leersia perrieri LPERR01G30700 I
LPERR05G04040 Leersia perrieri LPERR05G04040 I
Lus10009930.g Linum usitatissimum Lus10009930.g I
Lus10029061.g Linum usitatissimum Lus10029061.g I
Lus10034208.g Linum usitatissimum Lus10034208.g I
MDP0000278334 Malus domestica MDP0000278334 I
mgf011471m Mimulus guttatus mgf011471m I
mgf020556m Mimulus guttatus mgf020556m I
mgf026046m Mimulus guttatus mgf026046m I
MLOC_16076 Hordeum vulgare MLOC_16076 I
MLOC_56075 Hordeum vulgare MLOC_56075 I
MTR_3g094690 Medicago truncatula MTR_3g094690 I
MTR_5g075020 Medicago truncatula MTR_5g075020 I
MTR_5g083960 Medicago truncatula MTR_5g083960 I
OB01G44400 Oryza brachyantha OB01G44400 I
OB05G14280 Oryza brachyantha OB05G14280 I
OBART01G35680 Oryza barthii OBART01G35680 I
OBART05G04570 Oryza barthii OBART05G04570 I
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I
OLONG_000658 Oryza longistaminata OLONG_000658 I
OLONG_007328 Oryza longistaminata OLONG_007328 I
OMERI01G32750 Oryza meridionalis OMERI01G32750 I
OMERI05G04500 Oryza meridionalis OMERI05G04500 I
ONIVA01G40640 Oryza nivara ONIVA01G40640 I
ONIVA05G04920 Oryza nivara ONIVA05G04920 I
OPUNC01G34540 Oryza punctata OPUNC01G34540 I
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I
OS01G0825000 Oryza sativa OS01G0825000 I
OS05G0165450 Oryza sativa OS05G0165450 I
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I
Pavir.J00291 Panicum virgatum Pavir.J00291 I
Pavir.J06256 Panicum virgatum Pavir.J06256 I
Pavir.J13923 Panicum virgatum Pavir.J13923 I
Pavir.J18260 Panicum virgatum Pavir.J18260 I
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I
PK11564.1 Cannabis sativa PK11564.1 I
PK17217.1 Cannabis sativa PK17217.1 I
Pm000277 Prunus mume Pm000277 I
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I
Sb03g038410 Sorghum bicolor Sb03g038410 I
Sb09g004940 Sorghum bicolor Sb09g004940 I
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I
Si004575m.g Setaria italica Si004575m.g I
Si012018m.g Setaria italica Si012018m.g I
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I
TCM_032557 Theobroma cacao TCM_032557 I
TCM_042262 Theobroma cacao TCM_042262 I
TCM_045438 Theobroma cacao TCM_045438 I
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I
TRIUR3_34193 Triticum urartu TRIUR3_34193 I
LBD13 Vitis vinifera VIT_06s0004g07790 I
LBD15 Vitis vinifera VIT_13s0067g02380 I
LBD3 Vitis vinifera VIT_19s0027g01120 I