Lus10033120.g (Linum usitatissimum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Lus10033120.g T050267_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.914 0.960
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.914 0.960
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.901 0.880
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.875 0.860
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.875 0.840
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.868 0.800
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.862 0.840
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.862 0.820
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.862 0.800
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.862 0.800
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.851 0.820
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.851 0.800
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.851 0.800
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10033120 bHLH 145 194

Links

Other bHLH family TFs
Other Linum usitatissimum TFs

874 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29634.m002156 Ricinus communis 29634.m002156 N 0.000
SCL7 Arabidopsis thaliana AT3G50650 N 0.000
SCL4 Arabidopsis thaliana AT5G66770 N 0.000
Bo7g064520 Brassica oleracea Bo7g064520 N 0.000
Bostr.6864s0182 Boechera stricta Bostr.6864s0182 N 0.000
Carubv10016973m.g Capsella rubella Carubv10016973m.g N 0.000
Carubv10017026m.g Capsella rubella Carubv10017026m.g N 0.000
cassava18797.valid.m1 Manihot esculenta cassava18797.valid.m1 N 0.000
cassava35611.valid.m1 Manihot esculenta cassava35611.valid.m1 N 0.000
chr3.CM0127.460.nc Lotus japonicus chr3.CM0127.460.nc N 0.000
evm.TU.supercontig_6.108 Carica papaya evm.TU.supercontig_6.108 N 0.000
fgenesh2_kg.5__1404__AT3G50650.1 Arabidopsis lyrata fgenesh2_kg.5__1404__AT3G50650.1 N 0.000
fgenesh2_kg.8__2739__AT5G66770.1 Arabidopsis lyrata fgenesh2_kg.8__2739__AT5G66770.1 N 0.000
Gorai.003G015400 Gossypium raimondii Gorai.003G015400 N 0.000
Gorai.008G068100 Gossypium raimondii Gorai.008G068100 N 0.000
Lus10024014.g Linum usitatissimum Lus10024014.g N 0.000
Lus10041740.g Linum usitatissimum Lus10041740.g N 0.000
Pm026616 Prunus mume Pm026616 N 0.000
PRUPE_ppa003124mg Prunus persica PRUPE_ppa003124mg N 0.000
TCM_000399 Theobroma cacao TCM_000399 N 0.000
Thhalv10003860m.g Eutrema salsugineum Thhalv10003860m.g N 0.000
Thhalv10011122m.g Eutrema salsugineum Thhalv10011122m.g N 0.000