CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Eb03429
(
Panicum virgatum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Pavir.Eb03429
T050763_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Eb03429.1.p
bHLH
270
310
KVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLH
Pavir.Eb03429.2.p
bHLH
268
308
KVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLH
Links
Other
bHLH
family TFs
Other
Panicum virgatum
TFs
234 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28405.m000015
Ricinus communis
28405.m000015
N
0.883
30170.m014085
Ricinus communis
30170.m014085
N
0.890
Al_scaffold_0006_3588
Arabidopsis lyrata
Al_scaffold_0006_3588
N
0.879
Aquca_010_00556
Aquilegia coerulea
Aquca_010_00556
N
0.890
BHLH110
Arabidopsis thaliana
AT1G27660
N
0.890
BHLH154
Arabidopsis thaliana
AT2G31730
N
0.000
AT4G05170
Arabidopsis thaliana
AT4G05170
N
0.879
Bo4g049510
Brassica oleracea
Bo4g049510
N
0.000
Bo9g076250
Brassica oleracea
Bo9g076250
N
0.867
Bostr.26675s0184
Boechera stricta
Bostr.26675s0184
N
0.858
Bostr.2983s0058
Boechera stricta
Bostr.2983s0058
N
0.879
Bra005644
Brassica rapa
Bra005644
N
0.000
Bra029562
Brassica rapa
Bra029562
N
0.867
Cagra.1981s0012
Capsella grandiflora
Cagra.1981s0012
N
0.879
Carubv10003683m.g
Capsella rubella
Carubv10003683m.g
N
0.879
cassava21180.m1
Manihot esculenta
cassava21180.m1
N
0.894
cassava36740.valid.m1
Manihot esculenta
cassava36740.valid.m1
N
0.883
cassava37772.valid.m1
Manihot esculenta
cassava37772.valid.m1
N
0.883
cassava37773.valid.m1
Manihot esculenta
cassava37773.valid.m1
N
0.883
cassava42530.valid.m1
Manihot esculenta
cassava42530.valid.m1
N
0.890
Ca_04928
Cicer arietinum
Ca_04928
N
0.890
chr5.CM0200.1030.nc
Lotus japonicus
chr5.CM0200.1030.nc
N
0.859
Ciclev10001291m.g
Citrus clementina
Ciclev10001291m.g
N
0.890
Cla011068
Citrullus lanatus
Cla011068
N
0.858
Cla021101
Citrullus lanatus
Cla021101
N
0.890
Cucsa.095280
Cucumis sativus
Cucsa.095280
N
0.858
Cucsa.342640
Cucumis sativus
Cucsa.342640
N
0.890
Cucsa.359290
Cucumis sativus
Cucsa.359290
N
0.890
Eucgr.D00881
Eucalyptus grandis
Eucgr.D00881
N
0.867
evm.TU.supercontig_99.32
Carica papaya
evm.TU.supercontig_99.32
N
0.890
fgenesh2_kg.1__2924__AT1G27660.1
Arabidopsis lyrata
fgenesh2_kg.1__2924__AT1G27660.1
N
0.890
gene11847-v1.0-hybrid
Fragaria vesca
gene11847-v1.0-hybrid
N
0.890
Gorai.009G199600
Gossypium raimondii
Gorai.009G199600
N
0.890
Gorai.011G135700
Gossypium raimondii
Gorai.011G135700
N
0.000
GSMUA_Achr6G24280_001
Musa acuminata
GSMUA_Achr6G24280_001
N
0.890
LjSGA_021413.2
Lotus japonicus
LjSGA_021413.2
N
0.888
MDP0000168695
Malus domestica
MDP0000168695
N
0.890
MDP0000262020
Malus domestica
MDP0000262020
N
0.890
MDP0000687814
Malus domestica
MDP0000687814
N
0.890
mgf013138m
Mimulus guttatus
mgf013138m
N
0.890
MLOC_57076
Hordeum vulgare
MLOC_57076
N
0.890
MTR_3g112170
Medicago truncatula
MTR_3g112170
N
0.890
OLONG_021979
Oryza longistaminata
OLONG_021979
N
0.890
OPUNC01G00360
Oryza punctata
OPUNC01G00360
N
0.890
orange1.1g035657m.g
Citrus sinensis
orange1.1g035657m.g
N
0.890
PDK_20s1709901g001
Phoenix dactylifera
PDK_20s1709901g001
N
0.890
PGSC0003DMG400003746
Solanum tuberosum
PGSC0003DMG400003746
N
0.890
Pm005865
Prunus mume
Pm005865
N
0.890
Pm007388
Prunus mume
Pm007388
N
0.883
POPTR_0002s03380
Populus trichocarpa
POPTR_0002s03380
N
0.890
POPTR_0005s25240
Populus trichocarpa
POPTR_0005s25240
N
0.890
POPTR_0013s13050
Populus trichocarpa
POPTR_0013s13050
N
0.883
POPTR_0019s12530
Populus trichocarpa
POPTR_0019s12530
N
0.883
PRUPE_ppa005486mg
Prunus persica
PRUPE_ppa005486mg
N
0.890
PRUPE_ppa012528mg
Prunus persica
PRUPE_ppa012528mg
N
0.883
SapurV1A.0006s0290
Salix purpurea
SapurV1A.0006s0290
N
0.890
SapurV1A.0188s0290
Salix purpurea
SapurV1A.0188s0290
N
0.890
SapurV1A.0388s0180
Salix purpurea
SapurV1A.0388s0180
N
0.883
Sb03g008830
Sorghum bicolor
Sb03g008830
N
0.890
Solyc02g084880.2
Solanum lycopersicum
Solyc02g084880.2
N
0.890
Solyc04g080710.2
Solanum lycopersicum
Solyc04g080710.2
N
0.890
TCM_019871
Theobroma cacao
TCM_019871
N
0.883
TCM_034098
Theobroma cacao
TCM_034098
N
0.890
Thhalv10017421m.g
Eutrema salsugineum
Thhalv10017421m.g
N
0.000
Thhalv10029319m.g
Eutrema salsugineum
Thhalv10029319m.g
N
0.879
VIT_05s0094g00480
Vitis vinifera
VIT_05s0094g00480
N
0.858
VIT_18s0001g12970
Vitis vinifera
VIT_18s0001g12970
N
0.890