GLI1 (Canis familiaris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCAFG00000000223 T088201_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gli1
M01023_2.00 		Mus musculus
NGACCACCHN
NDGGTGGTCN		 PBM
Peterson et al.(2012)
Gli1 		0.818 0.983
GLI1
M02643_2.00 		Homo sapiens
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI1 		0.818 0.983
Gli1
M08976_2.00 		Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY		 Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C 		0.818 0.983
GLI1
M10176_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q2 		0.818 0.983
GLI1
M10177_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3_01 		0.818 0.983
GLI1
M10178_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3 		0.818 0.983
GLI1
M10179_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI_Q6 		0.818 0.983
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.796 0.887
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.796 0.887
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.796 0.887
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.796 0.887
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.796 0.887
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.796 0.887
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.779 0.852
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.779 0.852
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.779 0.852
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.779 0.852
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.779 0.852
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.779 0.852
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.779 0.852
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.779 0.852
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.779 0.852
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000000319 C2H2 ZF 234 259
ENSCAFP00000000319 C2H2 ZF 267 294
ENSCAFP00000000319 C2H2 ZF 300 324
ENSCAFP00000000319 C2H2 ZF 330 355
ENSCAFP00000000319 C2H2 ZF 361 386

Links

Other C2H2 ZF family TFs
Other Canis familiaris TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30054.m000786 Ricinus communis 30054.m000786 I
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I
APRR2 Arabidopsis thaliana AT4G18020 D
Bo1g019180 Brassica oleracea Bo1g019180 I
Bo7g105690 Brassica oleracea Bo7g105690 I
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I
Bra012623 Brassica rapa Bra012623 I
Bra013277 Brassica rapa Bra013277 I
Bra013278 Brassica rapa Bra013278 I
Bra013279 Brassica rapa Bra013279 I
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I
Carubv10004540m.g Capsella rubella Carubv10004540m.g I
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I
Ca_02285 Cicer arietinum Ca_02285 I
Ca_12825 Cicer arietinum Ca_12825 I
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I
Cla008926 Citrullus lanatus Cla008926 I
Cla016403 Citrullus lanatus Cla016403 I
Cucsa.321580 Cucumis sativus Cucsa.321580 I
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I
GLYMA01G40900 Glycine max GLYMA01G40900 I
GLYMA11G04441 Glycine max GLYMA11G04441 I
GLYMA17G16360 Glycine max GLYMA17G16360 I
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I
Lus10011044.g Linum usitatissimum Lus10011044.g I
Lus10030938.g Linum usitatissimum Lus10030938.g I
Lus10040109.g Linum usitatissimum Lus10040109.g I
MDP0000237396 Malus domestica MDP0000237396 I
MDP0000248863 Malus domestica MDP0000248863 I
MTR_4g098870 Medicago truncatula MTR_4g098870 I
MTR_5g014040 Medicago truncatula MTR_5g014040 I
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I
PK19826.1 Cannabis sativa PK19826.1 I
Pm014733 Prunus mume Pm014733 I
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I
TCM_015780 Theobroma cacao TCM_015780 I
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I
APRR2 Vitis vinifera VIT_02s0012g00570 I