scrt1b (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000040214 T090912_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.799 0.868
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.799 0.868
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.799 0.868
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.799 0.868
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.792 0.921
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.792 0.921
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.792 0.921
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.792 0.921
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.790 0.868
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.790 0.868
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.790 0.868
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.781 0.851
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.781 0.851
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.781 0.851
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000058828 C2H2 ZF 130 152
ENSDARP00000058828 C2H2 ZF 161 183
ENSDARP00000058828 C2H2 ZF 187 209
ENSDARP00000058828 C2H2 ZF 215 237
ENSDARP00000058828 C2H2 ZF 243 264

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL005176 Aedes aegypti AAEL005176 I 0.797
AAEL009230 Aedes aegypti AAEL009230 I 0.786
AAEL014359 Aedes aegypti AAEL014359 I 0.786
AATE010651 Anopheles atroparvus AATE010651 I 0.786
AATE020159 Anopheles atroparvus AATE020159 I 0.797
ACHR010032 Anopheles christyi ACHR010032 I 0.797
ACOM031677 Anopheles coluzzii ACOM031677 I 0.786
ACOM031685 Anopheles coluzzii ACOM031685 I 0.797
ACUA003488 Anopheles culicifacies ACUA003488 I 0.786
ACUA020861 Anopheles culicifacies ACUA020861 I 0.786
ACUA022497 Anopheles culicifacies ACUA022497 I 0.797
ACYPI004643 Acyrthosiphon pisum ACYPI004643 I 0.787
ACYPI34938 Acyrthosiphon pisum ACYPI34938 I 0.761
AFAF007486 Anopheles farauti AFAF007486 I 0.797
AFAF017001 Anopheles farauti AFAF017001 I 0.786
AFUN001835 Anopheles funestus AFUN001835 I 0.786
AFUN002786 Anopheles funestus AFUN002786 I 0.797
AGAP006791 Anopheles gambiae AGAP006791 I 0.797
AGAP006794 Anopheles gambiae AGAP006794 I 0.786
ALUE_0002049001 Ascaris lumbricoides ALUE_0002049001 I 0.775
AMEC013076 Anopheles melas AMEC013076 I 0.797
AMEC015586 Anopheles melas AMEC015586 I 0.786
AMEM013788 Anopheles merus AMEM013788 I 0.797
AMEM017035 Anopheles merus AMEM017035 I 0.786
AQUA003879 Anopheles quadriannulatus AQUA003879 I 0.797
ASIS012063 Anopheles sinensis ASIS012063 I 0.786
ASIS022059 Anopheles sinensis ASIS022059 I 0.797
ASTEI08595 Anopheles stephensi ASTEI08595 I 0.786
A_07725 Schistosoma haematobium A_07725 I 0.777
BGIBMGA000604 Bombyx mori BGIBMGA000604 I 0.756
BGIBMGA000607 Bombyx mori BGIBMGA000607 I 0.785
CapteG149623 Capitella teleta CapteG149623 I 0.781
CapteG176021 Capitella teleta CapteG176021 I 0.774
CapteG223614 Capitella teleta CapteG223614 I 0.789
CapteG76620 Capitella teleta CapteG76620 I 0.774
Cflo_09305--XP_001121064.1_APIME Camponotus floridanus Cflo_09305--XP_001121064.1_APIME I 0.795
CGI_10023711 Crassostrea gigas CGI_10023711 I 0.817
CLEC001353 Cimex lectularius CLEC001353 I 0.797
Cmyd_10009565 Chelonia mydas Cmyd_10009565 I 0.809
CPIJ004535 Culex quinquefasciatus CPIJ004535 I 0.786
CPIJ017517 Culex quinquefasciatus CPIJ017517 I 0.797
CpipJ_CPIJ004535 Culex pipiens CpipJ_CPIJ004535 I 0.786
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I 0.797
csin111588 Clonorchis sinensis csin111588 I 0.775
D915_06717 Fasciola hepatica D915_06717 I 0.777
D917_06340 Trichinella nativa D917_06340 I 0.787
D918_03987 Trichuris suis D918_03987 I 0.793
DAPPUDRAFT_14328 Daphnia pulex DAPPUDRAFT_14328 I 0.770
DME_0000421901 Dracunculus medinensis DME_0000421901 I 0.763
ECPE_0000958201 Echinostoma caproni ECPE_0000958201 I 0.777
EFV52761 Trichinella spiralis EFV52761 I 0.787
SCRT2 Anolis carolinensis ENSACAG00000016109 I 0.811
ENSAMEG00000005557 Ailuropoda melanoleuca ENSAMEG00000005557 I 0.792
ENSAMXG00000004776 Astyanax mexicanus ENSAMXG00000004776 I 0.825
ENSAMXG00000018604 Astyanax mexicanus ENSAMXG00000018604 I 0.794
ENSAMXG00000018733 Astyanax mexicanus ENSAMXG00000018733 I 0.806
ENSAPLG00000011730 Anas platyrhynchos ENSAPLG00000011730 I 0.816
SCRT1 Bos taurus ENSBTAG00000046208 I 0.792
SCRT2 Callithrix jacchus ENSCJAG00000020870 I 0.781
SCRT1 Callithrix jacchus ENSCJAG00000021406 I 0.792
SCRT2 Cavia porcellus ENSCPOG00000008447 I 0.781
ENSCPOG00000024058 Cavia porcellus ENSCPOG00000024058 I 0.792
ENSCSAG00000008549 Chlorocebus sabaeus ENSCSAG00000008549 I 0.792
ENSCSAG00000010473 Chlorocebus sabaeus ENSCSAG00000010473 I 0.781
scrt2 Danio rerio ENSDARG00000056175 I 0.804
scrt1a Danio rerio ENSDARG00000100821 I 0.827
SCRT2 Dasypus novemcinctus ENSDNOG00000002583 I 0.781
SCRT1 Dasypus novemcinctus ENSDNOG00000043826 I 0.792
ENSFALG00000005718 Ficedula albicollis ENSFALG00000005718 I 0.811
SCRT2 Felis catus ENSFCAG00000010922 I 0.781
SCRT2 Homo sapiens ENSG00000215397 D 0.781
SCRT1 Homo sapiens ENSG00000261678 D 0.792
SCRT1 Gasterosteus aculeatus ENSGACG00000004072 I 0.823
scrt1b Gasterosteus aculeatus ENSGACG00000008982 I 0.822
scrt2 Gasterosteus aculeatus ENSGACG00000011802 I 0.794
SCRT2 Gallus gallus ENSGALG00000028912 I 0.809
SCRT1 Gorilla gorilla ENSGGOG00000013612 I 0.792
ENSGGOG00000015228 Gorilla gorilla ENSGGOG00000015228 I 0.781
ENSGMOG00000000629 Gadus morhua ENSGMOG00000000629 I 0.825
ENSGMOG00000019519 Gadus morhua ENSGMOG00000019519 I 0.796
ENSLACG00000003588 Latimeria chalumnae ENSLACG00000003588 I 0.827
SCRT2 Loxodonta africana ENSLAFG00000030340 I 0.781
SCRT1 Loxodonta africana ENSLAFG00000031587 I 0.792
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I 0.799
ENSLOCG00000007573 Lepisosteus oculatus ENSLOCG00000007573 I 0.827
ENSMEUG00000009675 Macropus eugenii ENSMEUG00000009675 I 0.797
SCRT2 Meleagris gallopavo ENSMGAG00000016579 I 0.809
ENSMMUG00000017354 Macaca mulatta ENSMMUG00000017354 I 0.781
SCRT1 Macaca mulatta ENSMMUG00000028886 I 0.791
SCRT2 Monodelphis domestica ENSMODG00000019528 I 0.797
Scrt1 Mus musculus ENSMUSG00000048385 I 0.792
Scrt2 Mus musculus ENSMUSG00000060257 I 0.781
ENSNLEG00000009420 Nomascus leucogenys ENSNLEG00000009420 I 0.781
ENSOARG00000014008 Ovis aries ENSOARG00000014008 I 0.792
SCRT1 Otolemur garnettii ENSOGAG00000026538 I 0.792
SCRT2 Otolemur garnettii ENSOGAG00000031187 I 0.781
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I 0.782
ENSONIG00000006007 Oreochromis niloticus ENSONIG00000006007 I 0.823
ENSONIG00000016758 Oreochromis niloticus ENSONIG00000016758 I 0.804
ENSONIG00000019809 Oreochromis niloticus ENSONIG00000019809 I 0.823
scrt1b Oryzias latipes ENSORLG00000008641 I 0.825
scrt2 Oryzias latipes ENSORLG00000015072 I 0.806
ENSPANG00000017232 Papio anubis ENSPANG00000017232 I 0.792
ENSPFOG00000005616 Poecilia formosa ENSPFOG00000005616 I 0.823
ENSPFOG00000007738 Poecilia formosa ENSPFOG00000007738 I 0.806
ENSPFOG00000017719 Poecilia formosa ENSPFOG00000017719 I 0.825
Scrt2 Rattus norvegicus ENSRNOG00000005148 I 0.781
Scrt1 Rattus norvegicus ENSRNOG00000025594 I 0.792
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I 0.790
SCRT1 Sus scrofa ENSSSCG00000025879 I 0.792
ENSSTOG00000023184 Ictidomys tridecemlineatus ENSSTOG00000023184 I 0.792
SCRT2 Taeniopygia guttata ENSTGUG00000006801 I 0.809
scrt2 Tetraodon nigroviridis ENSTNIG00000012473 I 0.806
scrt1b Tetraodon nigroviridis ENSTNIG00000018384 I 0.825
scrt2 Takifugu rubripes ENSTRUG00000007620 I 0.806
scrt1b Takifugu rubripes ENSTRUG00000011637 I 0.825
SCRT1 Takifugu rubripes ENSTRUG00000012719 I 0.823
SCRT2 Tursiops truncatus ENSTTRG00000007039 I 0.781
ENSXMAG00000011590 Xiphophorus maculatus ENSXMAG00000011590 I 0.806
ENSXMAG00000014491 Xiphophorus maculatus ENSXMAG00000014491 I 0.825
ENSXMAG00000015353 Xiphophorus maculatus ENSXMAG00000015353 I 0.823
estExt_fgenesh2_pm.C_2290002 Branchiostoma floridae estExt_fgenesh2_pm.C_2290002 I 0.810
EVEC_0000710001 Enterobius vermicularis EVEC_0000710001 I 0.777
scrt Drosophila melanogaster FBgn0004880 D 0.799
CG12605 Drosophila melanogaster FBgn0035481 D 0.790
GA11715 Drosophila pseudoobscura FBgn0071765 I 0.790
GF24781 Drosophila ananassae FBgn0101774 I 0.790
GF25020 Drosophila ananassae FBgn0102012 I 0.799
GG14232 Drosophila erecta FBgn0106493 I 0.790
GG15174 Drosophila erecta FBgn0107427 I 0.799
GH15771 Drosophila grimshawi FBgn0123242 I 0.799
GI12551 Drosophila mojavensis FBgn0135308 I 0.799
GI12763 Drosophila mojavensis FBgn0135520 I 0.788
GM11368 Drosophila sechellia FBgn0166311 I 0.799
GM14024 Drosophila sechellia FBgn0168953 I 0.790
GM14603 Drosophila sechellia FBgn0169524 I 0.799
GD13304 Drosophila simulans FBgn0185023 I 0.790
GD13305 Drosophila simulans FBgn0185024 I 0.790
GD13794 Drosophila simulans FBgn0185494 I 0.799
GJ16103 Drosophila virilis FBgn0203288 I 0.799
GJ16104 Drosophila virilis FBgn0203289 I 0.788
GK16692 Drosophila willistoni FBgn0218694 I 0.790
GK17507 Drosophila willistoni FBgn0219506 I 0.799
GE20660 Drosophila yakuba FBgn0237965 I 0.790
GE21392 Drosophila yakuba FBgn0238652 I 0.799
HHAL001092-PA Halyomorpha halys HHAL001092-PA I 0.797
HHAL001095-PA Halyomorpha halys HHAL001095-PA I 0.788
HMEL014701 Heliconius melpomene HMEL014701 I 0.785
ISCW021315 Ixodes scapularis ISCW021315 I 0.809
KGM_21493 Danaus plexippus KGM_21493 I 0.785
L596_g15116 Steinernema carpocapsae L596_g15116 I 0.775
L798_11766 Zootermopsis nevadensis L798_11766 I 0.797
L889_g21793 Steinernema feltiae L889_g21793 I 0.771
L892_g9690 Steinernema scapterisci L892_g9690 I 0.775
L893_g27175 Steinernema glaseri L893_g27175 I 0.771
L898_g5709 Steinernema monticolum L898_g5709 I 0.771
LCUP005777 Lucilia cuprina LCUP005777 I 0.779
LCUP005780 Lucilia cuprina LCUP005780 I 0.799
LLOJ003272 Lutzomyia longipalpis LLOJ003272 I 0.797
LOAG_08891 Loa loa LOAG_08891 I 0.762
LotgiG58520 Lottia gigantea LotgiG58520 I 0.766
MCINX009925 Melitaea cinxia MCINX009925 I 0.785
MDOA001622 Musca domestica MDOA001622 I 0.777
MDOA005810 Musca domestica MDOA005810 I 0.799
MESCA005876 Megaselia scalaris MESCA005876 I 0.773
NEMVEDRAFT_v1g108258 Nematostella vectensis NEMVEDRAFT_v1g108258 I 0.783
nRc.2.0.1.g22231 Romanomermis culicivorax nRc.2.0.1.g22231 I 0.777
Ocbimv22039583m.g Octopus bimaculoides Ocbimv22039583m.g I 0.805
Ogr05737 Ophisaurus gracilis Ogr05737 I 0.802
PHUM474050 Pediculus humanus PHUM474050 I 0.766
PHUM474180 Pediculus humanus PHUM474180 I 0.797
PPAI000594 Phlebotomus papatasi PPAI000594 I 0.788
PTRK_0000719800 Parastrongyloides trichosuri PTRK_0000719800 I 0.786
Pvit_17685 Pogona vitticeps Pvit_17685 I 0.799
PXEA_0002510801 Protopolystoma xenopodis PXEA_0002510801 I 0.770
RSKR_0000492900 Rhabditophanes kr3021 RSKR_0000492900 I 0.775
Sakowv30035375m.g Saccoglossus kowalevskii Sakowv30035375m.g I 0.796
SCUD_0000371801 Schistosoma curassoni SCUD_0000371801 I 0.777
Sjc_0100840 Schistosoma japonicum Sjc_0100840 I 0.777
SMAR010760 Strigamia maritima SMAR010760 I 0.823
Smp_054430 Schistosoma mansoni Smp_054430 I 0.777
SMRZ_0000904801 Schistosoma margrebowiei SMRZ_0000904801 I 0.777
SMTD_0000188801 Schistosoma mattheei SMTD_0000188801 I 0.777
SMU15013927 Schmidtea mediterranea SMU15013927 I 0.777
SMUV_0000843501 Syphacia muris SMUV_0000843501 I 0.777
SPAL_0000842500 Strongyloides papillosus SPAL_0000842500 I 0.784
SPU_018393 Strongylocentrotus purpuratus SPU_018393 I 0.809
SSTP_0000144900 Strongyloides stercoralis SSTP_0000144900 I 0.786
SVE_1799900 Strongyloides venezuelensis SVE_1799900 I 0.784
T265_09545 Opisthorchis viverrini T265_09545 I 0.775
TCNE_0000669301 Toxocara canis TCNE_0000669301 I 0.772
tetur08g05890 Tetranychus urticae tetur08g05890 I 0.811
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I 0.793
TRE_0000944501 Trichobilharzia regenti TRE_0000944501 I 0.777
TriadG20314 Trichoplax adhaerens TriadG20314 I 0.773
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I 0.793
scrt2 Xenopus tropicalis XB-GENE-5995512 I 0.811