estExt_fgenesh2_pm.C_2290002 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 estExt_fgenesh2_pm.C_2290002 T138772_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.784 0.868
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.784 0.868
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.784 0.868
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.784 0.868
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.782 0.842
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.782 0.842
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.782 0.842
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.782 0.842
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.773 0.842
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.773 0.842
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.773 0.842
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.764 0.825
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.764 0.825
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.764 0.825
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pm.C_2290002 C2H2 ZF 136 158
estExt_fgenesh2_pm.C_2290002 C2H2 ZF 167 189
estExt_fgenesh2_pm.C_2290002 C2H2 ZF 193 215
estExt_fgenesh2_pm.C_2290002 C2H2 ZF 221 243
estExt_fgenesh2_pm.C_2290002 C2H2 ZF 249 270

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

200 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CGI_10023711 Crassostrea gigas CGI_10023711 I 0.815
scrt1b Danio rerio ENSDARG00000040214 I 0.810
scrt1a Danio rerio ENSDARG00000100821 I 0.810
ENSLACG00000003588 Latimeria chalumnae ENSLACG00000003588 I 0.810
ENSLOCG00000007573 Lepisosteus oculatus ENSLOCG00000007573 I 0.810
ENSAMXG00000004776 Astyanax mexicanus ENSAMXG00000004776 I 0.807
ENSGMOG00000000629 Gadus morhua ENSGMOG00000000629 I 0.807
scrt1b Oryzias latipes ENSORLG00000008641 I 0.807
ENSPFOG00000017719 Poecilia formosa ENSPFOG00000017719 I 0.807
scrt1b Tetraodon nigroviridis ENSTNIG00000018384 I 0.807
scrt1b Takifugu rubripes ENSTRUG00000011637 I 0.807
ENSXMAG00000014491 Xiphophorus maculatus ENSXMAG00000014491 I 0.807
SCRT1 Gasterosteus aculeatus ENSGACG00000004072 I 0.805
scrt1b Gasterosteus aculeatus ENSGACG00000008982 I 0.805
ENSONIG00000006007 Oreochromis niloticus ENSONIG00000006007 I 0.805
ENSONIG00000019809 Oreochromis niloticus ENSONIG00000019809 I 0.805
ENSPFOG00000005616 Poecilia formosa ENSPFOG00000005616 I 0.805
SCRT1 Takifugu rubripes ENSTRUG00000012719 I 0.805
ENSXMAG00000015353 Xiphophorus maculatus ENSXMAG00000015353 I 0.805
SMAR010760 Strigamia maritima SMAR010760 I 0.805
Ocbimv22039583m.g Octopus bimaculoides Ocbimv22039583m.g I 0.803
ENSAPLG00000011730 Anas platyrhynchos ENSAPLG00000011730 I 0.799
tetur08g05890 Tetranychus urticae tetur08g05890 I 0.794
scrt2 Xenopus tropicalis XB-GENE-5995512 I 0.794
SCRT2 Anolis carolinensis ENSACAG00000016109 I 0.793
ENSFALG00000005718 Ficedula albicollis ENSFALG00000005718 I 0.793
ISCW021315 Ixodes scapularis ISCW021315 I 0.792
SCRT2 Gallus gallus ENSGALG00000028912 I 0.791
SCRT2 Meleagris gallopavo ENSMGAG00000016579 I 0.791
SCRT2 Taeniopygia guttata ENSTGUG00000006801 I 0.791
SPU_018393 Strongylocentrotus purpuratus SPU_018393 I 0.791
Cmyd_10009565 Chelonia mydas Cmyd_10009565 I 0.791
D918_03987 Trichuris suis D918_03987 I 0.791
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I 0.791
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I 0.791
ENSAMXG00000018733 Astyanax mexicanus ENSAMXG00000018733 I 0.788
scrt2 Oryzias latipes ENSORLG00000015072 I 0.788
ENSPFOG00000007738 Poecilia formosa ENSPFOG00000007738 I 0.788
scrt2 Tetraodon nigroviridis ENSTNIG00000012473 I 0.788
scrt2 Takifugu rubripes ENSTRUG00000007620 I 0.788
ENSXMAG00000011590 Xiphophorus maculatus ENSXMAG00000011590 I 0.788
CapteG223614 Capitella teleta CapteG223614 I 0.787
DAPPUDRAFT_14328 Daphnia pulex DAPPUDRAFT_14328 I 0.787
scrt2 Danio rerio ENSDARG00000056175 I 0.786
ENSONIG00000016758 Oreochromis niloticus ENSONIG00000016758 I 0.786
EFV52761 Trichinella spiralis EFV52761 I 0.785
D917_06340 Trichinella nativa D917_06340 I 0.785
PTRK_0000719800 Parastrongyloides trichosuri PTRK_0000719800 I 0.785
SSTP_0000144900 Strongyloides stercoralis SSTP_0000144900 I 0.785
ENSAMEG00000005557 Ailuropoda melanoleuca ENSAMEG00000005557 I 0.784
SCRT1 Bos taurus ENSBTAG00000046208 I 0.784
SCRT1 Callithrix jacchus ENSCJAG00000021406 I 0.784
ENSCPOG00000024058 Cavia porcellus ENSCPOG00000024058 I 0.784
ENSCSAG00000008549 Chlorocebus sabaeus ENSCSAG00000008549 I 0.784
SCRT1 Dasypus novemcinctus ENSDNOG00000043826 I 0.784
SCRT1 Homo sapiens ENSG00000261678 D 0.784
SCRT1 Gorilla gorilla ENSGGOG00000013612 I 0.784
SCRT1 Loxodonta africana ENSLAFG00000031587 I 0.784
Scrt1 Mus musculus ENSMUSG00000048385 I 0.784
ENSOARG00000014008 Ovis aries ENSOARG00000014008 I 0.784
SCRT1 Otolemur garnettii ENSOGAG00000026538 I 0.784
ENSPANG00000017232 Papio anubis ENSPANG00000017232 I 0.784
Scrt1 Rattus norvegicus ENSRNOG00000025594 I 0.784
SCRT1 Sus scrofa ENSSSCG00000025879 I 0.784
ENSSTOG00000023184 Ictidomys tridecemlineatus ENSSTOG00000023184 I 0.784
Ogr05737 Ophisaurus gracilis Ogr05737 I 0.784
SCRT1 Macaca mulatta ENSMMUG00000028886 I 0.783
SPAL_0000842500 Strongyloides papillosus SPAL_0000842500 I 0.783
SVE_1799900 Strongyloides venezuelensis SVE_1799900 I 0.783
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I 0.782
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I 0.782
scrt Drosophila melanogaster FBgn0004880 D 0.782
GF25020 Drosophila ananassae FBgn0102012 I 0.782
GG15174 Drosophila erecta FBgn0107427 I 0.782
GH15771 Drosophila grimshawi FBgn0123242 I 0.782
GI12551 Drosophila mojavensis FBgn0135308 I 0.782
GM11368 Drosophila sechellia FBgn0166311 I 0.782
GM14603 Drosophila sechellia FBgn0169524 I 0.782
GD13794 Drosophila simulans FBgn0185494 I 0.782
GJ16103 Drosophila virilis FBgn0203288 I 0.782
GK17507 Drosophila willistoni FBgn0219506 I 0.782
GE21392 Drosophila yakuba FBgn0238652 I 0.782
LCUP005780 Lucilia cuprina LCUP005780 I 0.782
MDOA005810 Musca domestica MDOA005810 I 0.782
Pvit_17685 Pogona vitticeps Pvit_17685 I 0.781
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I 0.780
AAEL005176 Aedes aegypti AAEL005176 I 0.780
ACYPI004643 Acyrthosiphon pisum ACYPI004643 I 0.780
AGAP006791 Anopheles gambiae AGAP006791 I 0.780
CapteG149623 Capitella teleta CapteG149623 I 0.780
CPIJ017517 Culex quinquefasciatus CPIJ017517 I 0.780
L798_11766 Zootermopsis nevadensis L798_11766 I 0.780
PHUM474180 Pediculus humanus PHUM474180 I 0.780
CLEC001353 Cimex lectularius CLEC001353 I 0.780
HHAL001092-PA Halyomorpha halys HHAL001092-PA I 0.780
AATE020159 Anopheles atroparvus AATE020159 I 0.780
ACHR010032 Anopheles christyi ACHR010032 I 0.780
ACOM031685 Anopheles coluzzii ACOM031685 I 0.780
ACUA022497 Anopheles culicifacies ACUA022497 I 0.780
AFAF007486 Anopheles farauti AFAF007486 I 0.780
AFUN002786 Anopheles funestus AFUN002786 I 0.780
AMEC013076 Anopheles melas AMEC013076 I 0.780
AMEM013788 Anopheles merus AMEM013788 I 0.780
AQUA003879 Anopheles quadriannulatus AQUA003879 I 0.780
ASIS022059 Anopheles sinensis ASIS022059 I 0.780
LLOJ003272 Lutzomyia longipalpis LLOJ003272 I 0.780
ENSGMOG00000019519 Gadus morhua ENSGMOG00000019519 I 0.779
ENSMEUG00000009675 Macropus eugenii ENSMEUG00000009675 I 0.779
SCRT2 Monodelphis domestica ENSMODG00000019528 I 0.779
Sakowv30035375m.g Saccoglossus kowalevskii Sakowv30035375m.g I 0.779
BGIBMGA000607 Bombyx mori BGIBMGA000607 I 0.778
HMEL014701 Heliconius melpomene HMEL014701 I 0.778
KGM_21493 Danaus plexippus KGM_21493 I 0.778
MCINX009925 Melitaea cinxia MCINX009925 I 0.778
Cflo_09305--XP_001121064.1_APIME Camponotus floridanus Cflo_09305--XP_001121064.1_APIME I 0.778
PXEA_0002510801 Protopolystoma xenopodis PXEA_0002510801 I 0.778
ENSAMXG00000018604 Astyanax mexicanus ENSAMXG00000018604 I 0.777
scrt2 Gasterosteus aculeatus ENSGACG00000011802 I 0.777
NEMVEDRAFT_v1g108258 Nematostella vectensis NEMVEDRAFT_v1g108258 I 0.775
Smp_054430 Schistosoma mansoni Smp_054430 I 0.775
Sjc_0100840 Schistosoma japonicum Sjc_0100840 I 0.775
SMU15013927 Schmidtea mediterranea SMU15013927 I 0.775
A_07725 Schistosoma haematobium A_07725 I 0.775
D915_06717 Fasciola hepatica D915_06717 I 0.775
ECPE_0000958201 Echinostoma caproni ECPE_0000958201 I 0.775
EVEC_0000710001 Enterobius vermicularis EVEC_0000710001 I 0.775
nRc.2.0.1.g22231 Romanomermis culicivorax nRc.2.0.1.g22231 I 0.775
SCUD_0000371801 Schistosoma curassoni SCUD_0000371801 I 0.775
SMRZ_0000904801 Schistosoma margrebowiei SMRZ_0000904801 I 0.775
SMTD_0000188801 Schistosoma mattheei SMTD_0000188801 I 0.775
SMUV_0000843501 Syphacia muris SMUV_0000843501 I 0.775
TRE_0000944501 Trichobilharzia regenti TRE_0000944501 I 0.775
CG12605 Drosophila melanogaster FBgn0035481 D 0.773
GA11715 Drosophila pseudoobscura FBgn0071765 I 0.773
GF24781 Drosophila ananassae FBgn0101774 I 0.773
GG14232 Drosophila erecta FBgn0106493 I 0.773
GM14024 Drosophila sechellia FBgn0168953 I 0.773
GD13304 Drosophila simulans FBgn0185023 I 0.773
GD13305 Drosophila simulans FBgn0185024 I 0.773
GK16692 Drosophila willistoni FBgn0218694 I 0.773
GE20660 Drosophila yakuba FBgn0237965 I 0.773
ALUE_0002049001 Ascaris lumbricoides ALUE_0002049001 I 0.773
csin111588 Clonorchis sinensis csin111588 I 0.773
L596_g15116 Steinernema carpocapsae L596_g15116 I 0.773
L892_g9690 Steinernema scapterisci L892_g9690 I 0.773
RSKR_0000492900 Rhabditophanes kr3021 RSKR_0000492900 I 0.773
T265_09545 Opisthorchis viverrini T265_09545 I 0.773
CapteG176021 Capitella teleta CapteG176021 I 0.772
CapteG76620 Capitella teleta CapteG76620 I 0.772
TCNE_0000669301 Toxocara canis TCNE_0000669301 I 0.771
GI12763 Drosophila mojavensis FBgn0135520 I 0.770
GJ16104 Drosophila virilis FBgn0203289 I 0.770
LOAG_08891 Loa loa LOAG_08891 I 0.770
HHAL001095-PA Halyomorpha halys HHAL001095-PA I 0.770
PPAI000594 Phlebotomus papatasi PPAI000594 I 0.770
L889_g21793 Steinernema feltiae L889_g21793 I 0.769
L893_g27175 Steinernema glaseri L893_g27175 I 0.769
L898_g5709 Steinernema monticolum L898_g5709 I 0.769
CpipJ_CPIJ004535 Culex pipiens CpipJ_CPIJ004535 I 0.768
AAEL009230 Aedes aegypti AAEL009230 I 0.768
AAEL014359 Aedes aegypti AAEL014359 I 0.768
AGAP006794 Anopheles gambiae AGAP006794 I 0.768
CPIJ004535 Culex quinquefasciatus CPIJ004535 I 0.768
AATE010651 Anopheles atroparvus AATE010651 I 0.768
ACOM031677 Anopheles coluzzii ACOM031677 I 0.768
ACUA003488 Anopheles culicifacies ACUA003488 I 0.768
ACUA020861 Anopheles culicifacies ACUA020861 I 0.768
AFAF017001 Anopheles farauti AFAF017001 I 0.768
AFUN001835 Anopheles funestus AFUN001835 I 0.768
AMEC015586 Anopheles melas AMEC015586 I 0.768
AMEM017035 Anopheles merus AMEM017035 I 0.768
ASIS012063 Anopheles sinensis ASIS012063 I 0.768
ASTEI08595 Anopheles stephensi ASTEI08595 I 0.768
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I 0.765
TriadG20314 Trichoplax adhaerens TriadG20314 I 0.765
SCRT2 Callithrix jacchus ENSCJAG00000020870 I 0.764
SCRT2 Cavia porcellus ENSCPOG00000008447 I 0.764
ENSCSAG00000010473 Chlorocebus sabaeus ENSCSAG00000010473 I 0.764
SCRT2 Dasypus novemcinctus ENSDNOG00000002583 I 0.764
SCRT2 Felis catus ENSFCAG00000010922 I 0.764
SCRT2 Homo sapiens ENSG00000215397 D 0.764
ENSGGOG00000015228 Gorilla gorilla ENSGGOG00000015228 I 0.764
SCRT2 Loxodonta africana ENSLAFG00000030340 I 0.764
ENSMMUG00000017354 Macaca mulatta ENSMMUG00000017354 I 0.764
Scrt2 Mus musculus ENSMUSG00000060257 I 0.764
ENSNLEG00000009420 Nomascus leucogenys ENSNLEG00000009420 I 0.764
SCRT2 Otolemur garnettii ENSOGAG00000031187 I 0.764
Scrt2 Rattus norvegicus ENSRNOG00000005148 I 0.764
SCRT2 Tursiops truncatus ENSTTRG00000007039 I 0.764
LotgiG58520 Lottia gigantea LotgiG58520 I 0.764
WUBG_08818 Wuchereria bancrofti WUBG_08818 N 0.761
Bm4071 Brugia malayi Bm4071 N 0.761
WBGene00237257 Onchocerca volvulus WBGene00237257 N 0.761
LCUP005777 Lucilia cuprina LCUP005777 I 0.761
DME_0000421901 Dracunculus medinensis DME_0000421901 I 0.761
EEL_0000648301 Elaeophora elaphi EEL_0000648301 N 0.761
nAv.1.0.1.g07581 Acanthocheilonema viteae nAv.1.0.1.g07581 N 0.761
nOo.2.0.1.g10180 Onchocerca ochengi nOo.2.0.1.g10180 N 0.761
MDOA001622 Musca domestica MDOA001622 I 0.759
MESCA005876 Megaselia scalaris MESCA005876 I 0.756