scrt1b (Gasterosteus aculeatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGACG00000008982 T095639_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.799 0.860
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.799 0.860
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.799 0.860
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.799 0.860
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.792 0.912
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.792 0.912
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.792 0.912
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.792 0.912
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.785 0.842
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.785 0.842
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.785 0.842
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.781 0.860
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.781 0.860
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.781 0.860
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000011860 C2H2 ZF 126 148
ENSGACP00000011860 C2H2 ZF 157 179
ENSGACP00000011860 C2H2 ZF 183 205
ENSGACP00000011860 C2H2 ZF 211 233
ENSGACP00000011860 C2H2 ZF 239 260

Links

Other C2H2 ZF family TFs
Other Gasterosteus aculeatus TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000004776 Astyanax mexicanus ENSAMXG00000004776 I 0.825
ENSGMOG00000000629 Gadus morhua ENSGMOG00000000629 I 0.825
scrt1b Oryzias latipes ENSORLG00000008641 I 0.825
ENSPFOG00000017719 Poecilia formosa ENSPFOG00000017719 I 0.825
scrt1b Tetraodon nigroviridis ENSTNIG00000018384 I 0.825
scrt1b Takifugu rubripes ENSTRUG00000011637 I 0.825
ENSXMAG00000014491 Xiphophorus maculatus ENSXMAG00000014491 I 0.825
SCRT1 Gasterosteus aculeatus ENSGACG00000004072 I 0.823
ENSONIG00000006007 Oreochromis niloticus ENSONIG00000006007 I 0.823
ENSONIG00000019809 Oreochromis niloticus ENSONIG00000019809 I 0.823
ENSPFOG00000005616 Poecilia formosa ENSPFOG00000005616 I 0.823
SCRT1 Takifugu rubripes ENSTRUG00000012719 I 0.823
ENSXMAG00000015353 Xiphophorus maculatus ENSXMAG00000015353 I 0.823
SMAR010760 Strigamia maritima SMAR010760 I 0.823
scrt1b Danio rerio ENSDARG00000040214 I 0.822
scrt1a Danio rerio ENSDARG00000100821 I 0.822
ENSLACG00000003588 Latimeria chalumnae ENSLACG00000003588 I 0.822
ENSLOCG00000007573 Lepisosteus oculatus ENSLOCG00000007573 I 0.822
ENSAPLG00000011730 Anas platyrhynchos ENSAPLG00000011730 I 0.816
CGI_10023711 Crassostrea gigas CGI_10023711 I 0.812
SCRT2 Anolis carolinensis ENSACAG00000016109 I 0.811
ENSFALG00000005718 Ficedula albicollis ENSFALG00000005718 I 0.811
tetur08g05890 Tetranychus urticae tetur08g05890 I 0.811
SCRT2 Gallus gallus ENSGALG00000028912 I 0.809
SCRT2 Meleagris gallopavo ENSMGAG00000016579 I 0.809
SCRT2 Taeniopygia guttata ENSTGUG00000006801 I 0.809
ISCW021315 Ixodes scapularis ISCW021315 I 0.809
SPU_018393 Strongylocentrotus purpuratus SPU_018393 I 0.809
Cmyd_10009565 Chelonia mydas Cmyd_10009565 I 0.809
scrt2 Xenopus tropicalis XB-GENE-5995512 I 0.809
ENSAMXG00000018733 Astyanax mexicanus ENSAMXG00000018733 I 0.806
scrt2 Oryzias latipes ENSORLG00000015072 I 0.806
ENSPFOG00000007738 Poecilia formosa ENSPFOG00000007738 I 0.806
scrt2 Tetraodon nigroviridis ENSTNIG00000012473 I 0.806
scrt2 Takifugu rubripes ENSTRUG00000007620 I 0.806
ENSXMAG00000011590 Xiphophorus maculatus ENSXMAG00000011590 I 0.806
estExt_fgenesh2_pm.C_2290002 Branchiostoma floridae estExt_fgenesh2_pm.C_2290002 I 0.805
Ocbimv22039583m.g Octopus bimaculoides Ocbimv22039583m.g I 0.805
scrt2 Danio rerio ENSDARG00000056175 I 0.804
ENSONIG00000016758 Oreochromis niloticus ENSONIG00000016758 I 0.804
Ogr05737 Ophisaurus gracilis Ogr05737 I 0.802
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I 0.799
scrt Drosophila melanogaster FBgn0004880 D 0.799
GF25020 Drosophila ananassae FBgn0102012 I 0.799
GG15174 Drosophila erecta FBgn0107427 I 0.799
GH15771 Drosophila grimshawi FBgn0123242 I 0.799
GI12551 Drosophila mojavensis FBgn0135308 I 0.799
GM11368 Drosophila sechellia FBgn0166311 I 0.799
GM14603 Drosophila sechellia FBgn0169524 I 0.799
GD13794 Drosophila simulans FBgn0185494 I 0.799
GJ16103 Drosophila virilis FBgn0203288 I 0.799
GK17507 Drosophila willistoni FBgn0219506 I 0.799
GE21392 Drosophila yakuba FBgn0238652 I 0.799
Pvit_17685 Pogona vitticeps Pvit_17685 I 0.799
LCUP005780 Lucilia cuprina LCUP005780 I 0.799
MDOA005810 Musca domestica MDOA005810 I 0.799
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I 0.797
AAEL005176 Aedes aegypti AAEL005176 I 0.797
AGAP006791 Anopheles gambiae AGAP006791 I 0.797
CPIJ017517 Culex quinquefasciatus CPIJ017517 I 0.797
ENSMEUG00000009675 Macropus eugenii ENSMEUG00000009675 I 0.797
SCRT2 Monodelphis domestica ENSMODG00000019528 I 0.797
L798_11766 Zootermopsis nevadensis L798_11766 I 0.797
PHUM474180 Pediculus humanus PHUM474180 I 0.797
CLEC001353 Cimex lectularius CLEC001353 I 0.797
HHAL001092-PA Halyomorpha halys HHAL001092-PA I 0.797
AATE020159 Anopheles atroparvus AATE020159 I 0.797
ACHR010032 Anopheles christyi ACHR010032 I 0.797
ACOM031685 Anopheles coluzzii ACOM031685 I 0.797
ACUA022497 Anopheles culicifacies ACUA022497 I 0.797
AFAF007486 Anopheles farauti AFAF007486 I 0.797
AFUN002786 Anopheles funestus AFUN002786 I 0.797
AMEC013076 Anopheles melas AMEC013076 I 0.797
AMEM013788 Anopheles merus AMEM013788 I 0.797
AQUA003879 Anopheles quadriannulatus AQUA003879 I 0.797
ASIS022059 Anopheles sinensis ASIS022059 I 0.797
LLOJ003272 Lutzomyia longipalpis LLOJ003272 I 0.797
ENSGMOG00000019519 Gadus morhua ENSGMOG00000019519 I 0.796
Cflo_09305--XP_001121064.1_APIME Camponotus floridanus Cflo_09305--XP_001121064.1_APIME I 0.795
ENSAMXG00000018604 Astyanax mexicanus ENSAMXG00000018604 I 0.794
scrt2 Gasterosteus aculeatus ENSGACG00000011802 I 0.794
ENSAMEG00000005557 Ailuropoda melanoleuca ENSAMEG00000005557 I 0.792
SCRT1 Bos taurus ENSBTAG00000046208 I 0.792
SCRT1 Callithrix jacchus ENSCJAG00000021406 I 0.792
ENSCPOG00000024058 Cavia porcellus ENSCPOG00000024058 I 0.792
ENSCSAG00000008549 Chlorocebus sabaeus ENSCSAG00000008549 I 0.792
SCRT1 Dasypus novemcinctus ENSDNOG00000043826 I 0.792
SCRT1 Homo sapiens ENSG00000261678 D 0.792
SCRT1 Gorilla gorilla ENSGGOG00000013612 I 0.792
SCRT1 Loxodonta africana ENSLAFG00000031587 I 0.792
Scrt1 Mus musculus ENSMUSG00000048385 I 0.792
ENSOARG00000014008 Ovis aries ENSOARG00000014008 I 0.792
SCRT1 Otolemur garnettii ENSOGAG00000026538 I 0.792
ENSPANG00000017232 Papio anubis ENSPANG00000017232 I 0.792
Scrt1 Rattus norvegicus ENSRNOG00000025594 I 0.792
SCRT1 Sus scrofa ENSSSCG00000025879 I 0.792
ENSSTOG00000023184 Ictidomys tridecemlineatus ENSSTOG00000023184 I 0.792
Sakowv30035375m.g Saccoglossus kowalevskii Sakowv30035375m.g I 0.792
SCRT1 Macaca mulatta ENSMMUG00000028886 I 0.791
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I 0.790
CapteG223614 Capitella teleta CapteG223614 I 0.789
GI12763 Drosophila mojavensis FBgn0135520 I 0.788
GJ16104 Drosophila virilis FBgn0203289 I 0.788
HHAL001095-PA Halyomorpha halys HHAL001095-PA I 0.788
PPAI000594 Phlebotomus papatasi PPAI000594 I 0.788
D918_03987 Trichuris suis D918_03987 I 0.788
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I 0.788
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I 0.788
ACYPI004643 Acyrthosiphon pisum ACYPI004643 I 0.787
CpipJ_CPIJ004535 Culex pipiens CpipJ_CPIJ004535 I 0.786
AAEL009230 Aedes aegypti AAEL009230 I 0.786
AAEL014359 Aedes aegypti AAEL014359 I 0.786
AGAP006794 Anopheles gambiae AGAP006794 I 0.786
CPIJ004535 Culex quinquefasciatus CPIJ004535 I 0.786
AATE010651 Anopheles atroparvus AATE010651 I 0.786
ACOM031677 Anopheles coluzzii ACOM031677 I 0.786
ACUA003488 Anopheles culicifacies ACUA003488 I 0.786
ACUA020861 Anopheles culicifacies ACUA020861 I 0.786
AFAF017001 Anopheles farauti AFAF017001 I 0.786
AFUN001835 Anopheles funestus AFUN001835 I 0.786
AMEC015586 Anopheles melas AMEC015586 I 0.786
AMEM017035 Anopheles merus AMEM017035 I 0.786
ASIS012063 Anopheles sinensis ASIS012063 I 0.786
ASTEI08595 Anopheles stephensi ASTEI08595 I 0.786
PTRK_0000719800 Parastrongyloides trichosuri PTRK_0000719800 I 0.786
SSTP_0000144900 Strongyloides stercoralis SSTP_0000144900 I 0.786
BGIBMGA000607 Bombyx mori BGIBMGA000607 I 0.785
CG12605 Drosophila melanogaster FBgn0035481 D 0.785
GA11715 Drosophila pseudoobscura FBgn0071765 I 0.785
GF24781 Drosophila ananassae FBgn0101774 I 0.785
GG14232 Drosophila erecta FBgn0106493 I 0.785
GM14024 Drosophila sechellia FBgn0168953 I 0.785
GD13304 Drosophila simulans FBgn0185023 I 0.785
GD13305 Drosophila simulans FBgn0185024 I 0.785
GK16692 Drosophila willistoni FBgn0218694 I 0.785
GE20660 Drosophila yakuba FBgn0237965 I 0.785
HMEL014701 Heliconius melpomene HMEL014701 I 0.785
KGM_21493 Danaus plexippus KGM_21493 I 0.785
MCINX009925 Melitaea cinxia MCINX009925 I 0.785
SPAL_0000842500 Strongyloides papillosus SPAL_0000842500 I 0.784
SVE_1799900 Strongyloides venezuelensis SVE_1799900 I 0.784
EFV52761 Trichinella spiralis EFV52761 I 0.782
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I 0.782
D917_06340 Trichinella nativa D917_06340 I 0.782
CapteG149623 Capitella teleta CapteG149623 I 0.781
SCRT2 Callithrix jacchus ENSCJAG00000020870 I 0.781
SCRT2 Cavia porcellus ENSCPOG00000008447 I 0.781
ENSCSAG00000010473 Chlorocebus sabaeus ENSCSAG00000010473 I 0.781
SCRT2 Dasypus novemcinctus ENSDNOG00000002583 I 0.781
SCRT2 Felis catus ENSFCAG00000010922 I 0.781
SCRT2 Homo sapiens ENSG00000215397 D 0.781
ENSGGOG00000015228 Gorilla gorilla ENSGGOG00000015228 I 0.781
SCRT2 Loxodonta africana ENSLAFG00000030340 I 0.781
ENSMMUG00000017354 Macaca mulatta ENSMMUG00000017354 I 0.781
Scrt2 Mus musculus ENSMUSG00000060257 I 0.781
ENSNLEG00000009420 Nomascus leucogenys ENSNLEG00000009420 I 0.781
SCRT2 Otolemur garnettii ENSOGAG00000031187 I 0.781
Scrt2 Rattus norvegicus ENSRNOG00000005148 I 0.781
SCRT2 Tursiops truncatus ENSTTRG00000007039 I 0.781
NEMVEDRAFT_v1g108258 Nematostella vectensis NEMVEDRAFT_v1g108258 I 0.781
nRc.2.0.1.g22231 Romanomermis culicivorax nRc.2.0.1.g22231 I 0.777
D915_06717 Fasciola hepatica D915_06717 I 0.775
ECPE_0000958201 Echinostoma caproni ECPE_0000958201 I 0.775
CapteG176021 Capitella teleta CapteG176021 I 0.774
CapteG76620 Capitella teleta CapteG76620 I 0.774
LCUP005777 Lucilia cuprina LCUP005777 I 0.774
MESCA005876 Megaselia scalaris MESCA005876 I 0.773
L596_g15116 Steinernema carpocapsae L596_g15116 I 0.773
L889_g21793 Steinernema feltiae L889_g21793 I 0.773
L892_g9690 Steinernema scapterisci L892_g9690 I 0.773
L898_g5709 Steinernema monticolum L898_g5709 I 0.773
Smp_054430 Schistosoma mansoni Smp_054430 I 0.772
Sjc_0100840 Schistosoma japonicum Sjc_0100840 I 0.772
SMU15013927 Schmidtea mediterranea SMU15013927 I 0.772
MDOA001622 Musca domestica MDOA001622 I 0.772
A_07725 Schistosoma haematobium A_07725 I 0.772
csin111588 Clonorchis sinensis csin111588 I 0.772
EVEC_0000710001 Enterobius vermicularis EVEC_0000710001 I 0.772
SCUD_0000371801 Schistosoma curassoni SCUD_0000371801 I 0.772
SMRZ_0000904801 Schistosoma margrebowiei SMRZ_0000904801 I 0.772
SMTD_0000188801 Schistosoma mattheei SMTD_0000188801 I 0.772
SMUV_0000843501 Syphacia muris SMUV_0000843501 I 0.772
T265_09545 Opisthorchis viverrini T265_09545 I 0.772
TRE_0000944501 Trichobilharzia regenti TRE_0000944501 I 0.772
TriadG20314 Trichoplax adhaerens TriadG20314 I 0.771
L893_g27175 Steinernema glaseri L893_g27175 I 0.771
DAPPUDRAFT_14328 Daphnia pulex DAPPUDRAFT_14328 I 0.770
ALUE_0002049001 Ascaris lumbricoides ALUE_0002049001 I 0.770
RSKR_0000492900 Rhabditophanes kr3021 RSKR_0000492900 I 0.770
TCNE_0000669301 Toxocara canis TCNE_0000669301 I 0.770
ACYPI34938 Acyrthosiphon pisum ACYPI34938 I 0.766
PXEA_0002510801 Protopolystoma xenopodis PXEA_0002510801 I 0.765
LotgiG58520 Lottia gigantea LotgiG58520 I 0.761
PHUM474050 Pediculus humanus PHUM474050 I 0.761
LOAG_08891 Loa loa LOAG_08891 I 0.760
BGIBMGA000604 Bombyx mori BGIBMGA000604 I 0.759
DME_0000421901 Dracunculus medinensis DME_0000421901 I 0.758