scrt1b (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000011637 T112385_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.802 0.877
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.802 0.877
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.802 0.877
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.802 0.877
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.794 0.930
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.794 0.930
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.794 0.930
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.794 0.930
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.788 0.860
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.788 0.860
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.788 0.860
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.784 0.860
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.784 0.860
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.784 0.860
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000029418 C2H2 ZF 142 164
ENSTRUP00000029418 C2H2 ZF 173 195
ENSTRUP00000029418 C2H2 ZF 199 221
ENSTRUP00000029418 C2H2 ZF 227 249
ENSTRUP00000029418 C2H2 ZF 255 276

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000004776 Astyanax mexicanus ENSAMXG00000004776 I 0.827
ENSGMOG00000000629 Gadus morhua ENSGMOG00000000629 I 0.827
scrt1b Oryzias latipes ENSORLG00000008641 I 0.827
ENSPFOG00000017719 Poecilia formosa ENSPFOG00000017719 I 0.827
scrt1b Tetraodon nigroviridis ENSTNIG00000018384 I 0.827
ENSXMAG00000014491 Xiphophorus maculatus ENSXMAG00000014491 I 0.827
scrt1b Danio rerio ENSDARG00000040214 I 0.825
scrt1a Danio rerio ENSDARG00000100821 I 0.825
SCRT1 Gasterosteus aculeatus ENSGACG00000004072 I 0.825
scrt1b Gasterosteus aculeatus ENSGACG00000008982 I 0.825
ENSLACG00000003588 Latimeria chalumnae ENSLACG00000003588 I 0.825
ENSLOCG00000007573 Lepisosteus oculatus ENSLOCG00000007573 I 0.825
ENSONIG00000006007 Oreochromis niloticus ENSONIG00000006007 I 0.825
ENSONIG00000019809 Oreochromis niloticus ENSONIG00000019809 I 0.825
ENSPFOG00000005616 Poecilia formosa ENSPFOG00000005616 I 0.825
SCRT1 Takifugu rubripes ENSTRUG00000012719 I 0.825
ENSXMAG00000015353 Xiphophorus maculatus ENSXMAG00000015353 I 0.825
SMAR010760 Strigamia maritima SMAR010760 I 0.825
ENSAPLG00000011730 Anas platyrhynchos ENSAPLG00000011730 I 0.819
CGI_10023711 Crassostrea gigas CGI_10023711 I 0.814
tetur08g05890 Tetranychus urticae tetur08g05890 I 0.814
SCRT2 Anolis carolinensis ENSACAG00000016109 I 0.813
ENSFALG00000005718 Ficedula albicollis ENSFALG00000005718 I 0.813
SCRT2 Gallus gallus ENSGALG00000028912 I 0.811
SCRT2 Meleagris gallopavo ENSMGAG00000016579 I 0.811
SCRT2 Taeniopygia guttata ENSTGUG00000006801 I 0.811
ISCW021315 Ixodes scapularis ISCW021315 I 0.811
SPU_018393 Strongylocentrotus purpuratus SPU_018393 I 0.811
Cmyd_10009565 Chelonia mydas Cmyd_10009565 I 0.811
scrt2 Xenopus tropicalis XB-GENE-5995512 I 0.811
ENSAMXG00000018733 Astyanax mexicanus ENSAMXG00000018733 I 0.808
scrt2 Oryzias latipes ENSORLG00000015072 I 0.808
ENSPFOG00000007738 Poecilia formosa ENSPFOG00000007738 I 0.808
scrt2 Tetraodon nigroviridis ENSTNIG00000012473 I 0.808
scrt2 Takifugu rubripes ENSTRUG00000007620 I 0.808
ENSXMAG00000011590 Xiphophorus maculatus ENSXMAG00000011590 I 0.808
estExt_fgenesh2_pm.C_2290002 Branchiostoma floridae estExt_fgenesh2_pm.C_2290002 I 0.807
Ocbimv22039583m.g Octopus bimaculoides Ocbimv22039583m.g I 0.807
scrt2 Danio rerio ENSDARG00000056175 I 0.806
ENSONIG00000016758 Oreochromis niloticus ENSONIG00000016758 I 0.806
Ogr05737 Ophisaurus gracilis Ogr05737 I 0.804
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I 0.802
scrt Drosophila melanogaster FBgn0004880 D 0.802
GF25020 Drosophila ananassae FBgn0102012 I 0.802
GG15174 Drosophila erecta FBgn0107427 I 0.802
GH15771 Drosophila grimshawi FBgn0123242 I 0.802
GI12551 Drosophila mojavensis FBgn0135308 I 0.802
GM11368 Drosophila sechellia FBgn0166311 I 0.802
GM14603 Drosophila sechellia FBgn0169524 I 0.802
GD13794 Drosophila simulans FBgn0185494 I 0.802
GJ16103 Drosophila virilis FBgn0203288 I 0.802
GK17507 Drosophila willistoni FBgn0219506 I 0.802
GE21392 Drosophila yakuba FBgn0238652 I 0.802
LCUP005780 Lucilia cuprina LCUP005780 I 0.802
MDOA005810 Musca domestica MDOA005810 I 0.802
Pvit_17685 Pogona vitticeps Pvit_17685 I 0.801
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I 0.800
AAEL005176 Aedes aegypti AAEL005176 I 0.800
AGAP006791 Anopheles gambiae AGAP006791 I 0.800
CPIJ017517 Culex quinquefasciatus CPIJ017517 I 0.800
L798_11766 Zootermopsis nevadensis L798_11766 I 0.800
PHUM474180 Pediculus humanus PHUM474180 I 0.800
CLEC001353 Cimex lectularius CLEC001353 I 0.800
HHAL001092-PA Halyomorpha halys HHAL001092-PA I 0.800
AATE020159 Anopheles atroparvus AATE020159 I 0.800
ACHR010032 Anopheles christyi ACHR010032 I 0.800
ACOM031685 Anopheles coluzzii ACOM031685 I 0.800
ACUA022497 Anopheles culicifacies ACUA022497 I 0.800
AFAF007486 Anopheles farauti AFAF007486 I 0.800
AFUN002786 Anopheles funestus AFUN002786 I 0.800
AMEC013076 Anopheles melas AMEC013076 I 0.800
AMEM013788 Anopheles merus AMEM013788 I 0.800
AQUA003879 Anopheles quadriannulatus AQUA003879 I 0.800
ASIS022059 Anopheles sinensis ASIS022059 I 0.800
LLOJ003272 Lutzomyia longipalpis LLOJ003272 I 0.800
ENSMEUG00000009675 Macropus eugenii ENSMEUG00000009675 I 0.799
SCRT2 Monodelphis domestica ENSMODG00000019528 I 0.799
ENSGMOG00000019519 Gadus morhua ENSGMOG00000019519 I 0.798
Cflo_09305--XP_001121064.1_APIME Camponotus floridanus Cflo_09305--XP_001121064.1_APIME I 0.797
ENSAMXG00000018604 Astyanax mexicanus ENSAMXG00000018604 I 0.796
scrt2 Gasterosteus aculeatus ENSGACG00000011802 I 0.796
ENSAMEG00000005557 Ailuropoda melanoleuca ENSAMEG00000005557 I 0.794
SCRT1 Bos taurus ENSBTAG00000046208 I 0.794
SCRT1 Callithrix jacchus ENSCJAG00000021406 I 0.794
ENSCPOG00000024058 Cavia porcellus ENSCPOG00000024058 I 0.794
ENSCSAG00000008549 Chlorocebus sabaeus ENSCSAG00000008549 I 0.794
SCRT1 Dasypus novemcinctus ENSDNOG00000043826 I 0.794
SCRT1 Homo sapiens ENSG00000261678 D 0.794
SCRT1 Gorilla gorilla ENSGGOG00000013612 I 0.794
SCRT1 Loxodonta africana ENSLAFG00000031587 I 0.794
SCRT1 Macaca mulatta ENSMMUG00000028886 I 0.794
Scrt1 Mus musculus ENSMUSG00000048385 I 0.794
ENSOARG00000014008 Ovis aries ENSOARG00000014008 I 0.794
SCRT1 Otolemur garnettii ENSOGAG00000026538 I 0.794
ENSPANG00000017232 Papio anubis ENSPANG00000017232 I 0.794
Scrt1 Rattus norvegicus ENSRNOG00000025594 I 0.794
SCRT1 Sus scrofa ENSSSCG00000025879 I 0.794
ENSSTOG00000023184 Ictidomys tridecemlineatus ENSSTOG00000023184 I 0.794
Sakowv30035375m.g Saccoglossus kowalevskii Sakowv30035375m.g I 0.794
CapteG223614 Capitella teleta CapteG223614 I 0.792
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I 0.792
ACYPI004643 Acyrthosiphon pisum ACYPI004643 I 0.790
HHAL001095-PA Halyomorpha halys HHAL001095-PA I 0.790
PPAI000594 Phlebotomus papatasi PPAI000594 I 0.790
D918_03987 Trichuris suis D918_03987 I 0.790
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I 0.790
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I 0.790
PTRK_0000719800 Parastrongyloides trichosuri PTRK_0000719800 I 0.789
SSTP_0000144900 Strongyloides stercoralis SSTP_0000144900 I 0.789
CpipJ_CPIJ004535 Culex pipiens CpipJ_CPIJ004535 I 0.788
AAEL009230 Aedes aegypti AAEL009230 I 0.788
AAEL014359 Aedes aegypti AAEL014359 I 0.788
AGAP006794 Anopheles gambiae AGAP006794 I 0.788
BGIBMGA000607 Bombyx mori BGIBMGA000607 I 0.788
CPIJ004535 Culex quinquefasciatus CPIJ004535 I 0.788
CG12605 Drosophila melanogaster FBgn0035481 D 0.788
GA11715 Drosophila pseudoobscura FBgn0071765 I 0.788
GF24781 Drosophila ananassae FBgn0101774 I 0.788
GG14232 Drosophila erecta FBgn0106493 I 0.788
GM14024 Drosophila sechellia FBgn0168953 I 0.788
GD13304 Drosophila simulans FBgn0185023 I 0.788
GD13305 Drosophila simulans FBgn0185024 I 0.788
GK16692 Drosophila willistoni FBgn0218694 I 0.788
GE20660 Drosophila yakuba FBgn0237965 I 0.788
HMEL014701 Heliconius melpomene HMEL014701 I 0.788
KGM_21493 Danaus plexippus KGM_21493 I 0.788
MCINX009925 Melitaea cinxia MCINX009925 I 0.788
AATE010651 Anopheles atroparvus AATE010651 I 0.788
ACOM031677 Anopheles coluzzii ACOM031677 I 0.788
ACUA003488 Anopheles culicifacies ACUA003488 I 0.788
ACUA020861 Anopheles culicifacies ACUA020861 I 0.788
AFAF017001 Anopheles farauti AFAF017001 I 0.788
AFUN001835 Anopheles funestus AFUN001835 I 0.788
AMEC015586 Anopheles melas AMEC015586 I 0.788
AMEM017035 Anopheles merus AMEM017035 I 0.788
ASIS012063 Anopheles sinensis ASIS012063 I 0.788
ASTEI08595 Anopheles stephensi ASTEI08595 I 0.788
SPAL_0000842500 Strongyloides papillosus SPAL_0000842500 I 0.787
SVE_1799900 Strongyloides venezuelensis SVE_1799900 I 0.787
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I 0.785
GI12763 Drosophila mojavensis FBgn0135520 I 0.785
GJ16104 Drosophila virilis FBgn0203289 I 0.785
CapteG149623 Capitella teleta CapteG149623 I 0.784
EFV52761 Trichinella spiralis EFV52761 I 0.784
SCRT2 Callithrix jacchus ENSCJAG00000020870 I 0.784
SCRT2 Cavia porcellus ENSCPOG00000008447 I 0.784
ENSCSAG00000010473 Chlorocebus sabaeus ENSCSAG00000010473 I 0.784
SCRT2 Dasypus novemcinctus ENSDNOG00000002583 I 0.784
SCRT2 Felis catus ENSFCAG00000010922 I 0.784
SCRT2 Homo sapiens ENSG00000215397 D 0.784
ENSGGOG00000015228 Gorilla gorilla ENSGGOG00000015228 I 0.784
SCRT2 Loxodonta africana ENSLAFG00000030340 I 0.784
ENSMMUG00000017354 Macaca mulatta ENSMMUG00000017354 I 0.784
Scrt2 Mus musculus ENSMUSG00000060257 I 0.784
ENSNLEG00000009420 Nomascus leucogenys ENSNLEG00000009420 I 0.784
SCRT2 Otolemur garnettii ENSOGAG00000031187 I 0.784
Scrt2 Rattus norvegicus ENSRNOG00000005148 I 0.784
SCRT2 Tursiops truncatus ENSTTRG00000007039 I 0.784
D917_06340 Trichinella nativa D917_06340 I 0.784
NEMVEDRAFT_v1g108258 Nematostella vectensis NEMVEDRAFT_v1g108258 I 0.781
nRc.2.0.1.g22231 Romanomermis culicivorax nRc.2.0.1.g22231 I 0.779
D915_06717 Fasciola hepatica D915_06717 I 0.777
ECPE_0000958201 Echinostoma caproni ECPE_0000958201 I 0.777
CapteG176021 Capitella teleta CapteG176021 I 0.776
CapteG76620 Capitella teleta CapteG76620 I 0.776
LCUP005777 Lucilia cuprina LCUP005777 I 0.776
Smp_054430 Schistosoma mansoni Smp_054430 I 0.775
Sjc_0100840 Schistosoma japonicum Sjc_0100840 I 0.775
SMU15013927 Schmidtea mediterranea SMU15013927 I 0.775
A_07725 Schistosoma haematobium A_07725 I 0.775
csin111588 Clonorchis sinensis csin111588 I 0.775
SCUD_0000371801 Schistosoma curassoni SCUD_0000371801 I 0.775
SMRZ_0000904801 Schistosoma margrebowiei SMRZ_0000904801 I 0.775
SMTD_0000188801 Schistosoma mattheei SMTD_0000188801 I 0.775
T265_09545 Opisthorchis viverrini T265_09545 I 0.775
TRE_0000944501 Trichobilharzia regenti TRE_0000944501 I 0.775
MDOA001622 Musca domestica MDOA001622 I 0.774
EVEC_0000710001 Enterobius vermicularis EVEC_0000710001 I 0.774
SMUV_0000843501 Syphacia muris SMUV_0000843501 I 0.774
MESCA005876 Megaselia scalaris MESCA005876 I 0.773
L596_g15116 Steinernema carpocapsae L596_g15116 I 0.773
L889_g21793 Steinernema feltiae L889_g21793 I 0.773
L892_g9690 Steinernema scapterisci L892_g9690 I 0.773
L898_g5709 Steinernema monticolum L898_g5709 I 0.773
DAPPUDRAFT_14328 Daphnia pulex DAPPUDRAFT_14328 I 0.772
ALUE_0002049001 Ascaris lumbricoides ALUE_0002049001 I 0.772
RSKR_0000492900 Rhabditophanes kr3021 RSKR_0000492900 I 0.772
TCNE_0000669301 Toxocara canis TCNE_0000669301 I 0.772
TriadG20314 Trichoplax adhaerens TriadG20314 I 0.771
L893_g27175 Steinernema glaseri L893_g27175 I 0.771
PXEA_0002510801 Protopolystoma xenopodis PXEA_0002510801 I 0.768
ACYPI34938 Acyrthosiphon pisum ACYPI34938 I 0.763
LotgiG58520 Lottia gigantea LotgiG58520 I 0.763
PHUM474050 Pediculus humanus PHUM474050 I 0.763
LOAG_08891 Loa loa LOAG_08891 I 0.762
DME_0000421901 Dracunculus medinensis DME_0000421901 I 0.761
BGIBMGA000604 Bombyx mori BGIBMGA000604 I 0.759
BGLB009896 Biomphalaria glabrata BGLB009896 I 0.756