Scrt1 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000025594 T109125_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.827 1.000
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.827 1.000
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.827 1.000
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.827 1.000
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.786 0.885
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.786 0.885
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.786 0.885
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.785 0.858
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.785 0.858
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.785 0.858
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.785 0.858
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.767 0.814
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.767 0.814
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.767 0.814
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000030637 C2H2 ZF 191 213
ENSRNOP00000030637 C2H2 ZF 223 244
ENSRNOP00000030637 C2H2 ZF 248 270
ENSRNOP00000030637 C2H2 ZF 276 298
ENSRNOP00000030637 C2H2 ZF 304 325

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL005176 Aedes aegypti AAEL005176 I 0.792
AAEL009230 Aedes aegypti AAEL009230 I 0.781
AAEL014359 Aedes aegypti AAEL014359 I 0.781
AATE010651 Anopheles atroparvus AATE010651 I 0.781
AATE020159 Anopheles atroparvus AATE020159 I 0.792
ACHR010032 Anopheles christyi ACHR010032 I 0.792
ACOM031677 Anopheles coluzzii ACOM031677 I 0.781
ACOM031685 Anopheles coluzzii ACOM031685 I 0.792
ACUA003488 Anopheles culicifacies ACUA003488 I 0.781
ACUA020861 Anopheles culicifacies ACUA020861 I 0.781
ACUA022497 Anopheles culicifacies ACUA022497 I 0.792
ACYPI004643 Acyrthosiphon pisum ACYPI004643 I 0.788
ACYPI34938 Acyrthosiphon pisum ACYPI34938 I 0.765
AFAF007486 Anopheles farauti AFAF007486 I 0.792
AFAF017001 Anopheles farauti AFAF017001 I 0.781
AFUN001835 Anopheles funestus AFUN001835 I 0.781
AFUN002786 Anopheles funestus AFUN002786 I 0.792
AGAP006791 Anopheles gambiae AGAP006791 I 0.792
AGAP006794 Anopheles gambiae AGAP006794 I 0.781
ALUE_0002049001 Ascaris lumbricoides ALUE_0002049001 I 0.763
AMEC013076 Anopheles melas AMEC013076 I 0.792
AMEC015586 Anopheles melas AMEC015586 I 0.781
AMEM013788 Anopheles merus AMEM013788 I 0.792
AMEM017035 Anopheles merus AMEM017035 I 0.781
AQUA003879 Anopheles quadriannulatus AQUA003879 I 0.792
ASIS012063 Anopheles sinensis ASIS012063 I 0.781
ASIS022059 Anopheles sinensis ASIS022059 I 0.792
ASTEI08595 Anopheles stephensi ASTEI08595 I 0.781
A_07725 Schistosoma haematobium A_07725 I 0.763
BGIBMGA000604 Bombyx mori BGIBMGA000604 I 0.768
BGIBMGA000607 Bombyx mori BGIBMGA000607 I 0.790
CapteG149623 Capitella teleta CapteG149623 I 0.765
CapteG176021 Capitella teleta CapteG176021 I 0.765
CapteG223614 Capitella teleta CapteG223614 I 0.772
CapteG76620 Capitella teleta CapteG76620 I 0.765
Cflo_09305--XP_001121064.1_APIME Camponotus floridanus Cflo_09305--XP_001121064.1_APIME I 0.780
CGI_10023711 Crassostrea gigas CGI_10023711 I 0.782
CLEC001353 Cimex lectularius CLEC001353 I 0.792
Cmyd_10009565 Chelonia mydas Cmyd_10009565 I 0.790
CPIJ004535 Culex quinquefasciatus CPIJ004535 I 0.781
CPIJ017517 Culex quinquefasciatus CPIJ017517 I 0.792
CpipJ_CPIJ004535 Culex pipiens CpipJ_CPIJ004535 I 0.781
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I 0.792
csin111588 Clonorchis sinensis csin111588 I 0.763
D915_06717 Fasciola hepatica D915_06717 I 0.765
D917_06340 Trichinella nativa D917_06340 I 0.755
D918_03987 Trichuris suis D918_03987 I 0.759
DAPPUDRAFT_14328 Daphnia pulex DAPPUDRAFT_14328 I 0.774
ECPE_0000958201 Echinostoma caproni ECPE_0000958201 I 0.765
EFV52761 Trichinella spiralis EFV52761 I 0.755
SCRT2 Anolis carolinensis ENSACAG00000016109 I 0.790
ENSAMEG00000005557 Ailuropoda melanoleuca ENSAMEG00000005557 I 0.827
ENSAMXG00000004776 Astyanax mexicanus ENSAMXG00000004776 I 0.794
ENSAMXG00000018604 Astyanax mexicanus ENSAMXG00000018604 I 0.796
ENSAMXG00000018733 Astyanax mexicanus ENSAMXG00000018733 I 0.785
ENSAPLG00000011730 Anas platyrhynchos ENSAPLG00000011730 I 0.792
SCRT1 Bos taurus ENSBTAG00000046208 I 0.827
SCRT2 Callithrix jacchus ENSCJAG00000020870 I 0.786
SCRT1 Callithrix jacchus ENSCJAG00000021406 I 0.827
SCRT2 Cavia porcellus ENSCPOG00000008447 I 0.786
ENSCPOG00000024058 Cavia porcellus ENSCPOG00000024058 I 0.827
ENSCSAG00000008549 Chlorocebus sabaeus ENSCSAG00000008549 I 0.827
ENSCSAG00000010473 Chlorocebus sabaeus ENSCSAG00000010473 I 0.786
scrt1b Danio rerio ENSDARG00000040214 I 0.792
scrt2 Danio rerio ENSDARG00000056175 I 0.785
scrt1a Danio rerio ENSDARG00000100821 I 0.792
SCRT2 Dasypus novemcinctus ENSDNOG00000002583 I 0.786
SCRT1 Dasypus novemcinctus ENSDNOG00000043826 I 0.827
ENSFALG00000005718 Ficedula albicollis ENSFALG00000005718 I 0.792
SCRT2 Felis catus ENSFCAG00000010922 I 0.786
SCRT2 Homo sapiens ENSG00000215397 D 0.786
SCRT1 Homo sapiens ENSG00000261678 D 0.827
SCRT1 Gasterosteus aculeatus ENSGACG00000004072 I 0.794
scrt1b Gasterosteus aculeatus ENSGACG00000008982 I 0.792
scrt2 Gasterosteus aculeatus ENSGACG00000011802 I 0.785
SCRT2 Gallus gallus ENSGALG00000028912 I 0.790
SCRT1 Gorilla gorilla ENSGGOG00000013612 I 0.827
ENSGGOG00000015228 Gorilla gorilla ENSGGOG00000015228 I 0.786
ENSGMOG00000000629 Gadus morhua ENSGMOG00000000629 I 0.794
ENSGMOG00000019519 Gadus morhua ENSGMOG00000019519 I 0.785
ENSLACG00000003588 Latimeria chalumnae ENSLACG00000003588 I 0.792
SCRT2 Loxodonta africana ENSLAFG00000030340 I 0.786
SCRT1 Loxodonta africana ENSLAFG00000031587 I 0.827
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I 0.780
ENSLOCG00000007573 Lepisosteus oculatus ENSLOCG00000007573 I 0.792
ENSMEUG00000009675 Macropus eugenii ENSMEUG00000009675 I 0.784
SCRT2 Meleagris gallopavo ENSMGAG00000016579 I 0.790
ENSMMUG00000017354 Macaca mulatta ENSMMUG00000017354 I 0.786
SCRT1 Macaca mulatta ENSMMUG00000028886 I 0.826
SCRT2 Monodelphis domestica ENSMODG00000019528 I 0.784
Scrt1 Mus musculus ENSMUSG00000048385 I 0.827
Scrt2 Mus musculus ENSMUSG00000060257 I 0.786
ENSNLEG00000009420 Nomascus leucogenys ENSNLEG00000009420 I 0.786
ENSOARG00000014008 Ovis aries ENSOARG00000014008 I 0.827
SCRT1 Otolemur garnettii ENSOGAG00000026538 I 0.827
SCRT2 Otolemur garnettii ENSOGAG00000031187 I 0.786
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I 0.775
ENSONIG00000006007 Oreochromis niloticus ENSONIG00000006007 I 0.794
ENSONIG00000016758 Oreochromis niloticus ENSONIG00000016758 I 0.785
ENSONIG00000019809 Oreochromis niloticus ENSONIG00000019809 I 0.794
scrt1b Oryzias latipes ENSORLG00000008641 I 0.794
scrt2 Oryzias latipes ENSORLG00000015072 I 0.785
ENSPANG00000017232 Papio anubis ENSPANG00000017232 I 0.827
ENSPFOG00000005616 Poecilia formosa ENSPFOG00000005616 I 0.794
ENSPFOG00000007738 Poecilia formosa ENSPFOG00000007738 I 0.785
ENSPFOG00000017719 Poecilia formosa ENSPFOG00000017719 I 0.794
Scrt2 Rattus norvegicus ENSRNOG00000005148 I 0.786
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I 0.823
SCRT1 Sus scrofa ENSSSCG00000025879 I 0.827
ENSSTOG00000023184 Ictidomys tridecemlineatus ENSSTOG00000023184 I 0.827
SCRT2 Taeniopygia guttata ENSTGUG00000006801 I 0.790
scrt2 Tetraodon nigroviridis ENSTNIG00000012473 I 0.785
scrt1b Tetraodon nigroviridis ENSTNIG00000018384 I 0.794
scrt2 Takifugu rubripes ENSTRUG00000007620 I 0.785
scrt1b Takifugu rubripes ENSTRUG00000011637 I 0.794
SCRT1 Takifugu rubripes ENSTRUG00000012719 I 0.794
SCRT2 Tursiops truncatus ENSTTRG00000007039 I 0.786
ENSXMAG00000011590 Xiphophorus maculatus ENSXMAG00000011590 I 0.785
ENSXMAG00000014491 Xiphophorus maculatus ENSXMAG00000014491 I 0.794
ENSXMAG00000015353 Xiphophorus maculatus ENSXMAG00000015353 I 0.794
estExt_fgenesh2_pm.C_2290002 Branchiostoma floridae estExt_fgenesh2_pm.C_2290002 I 0.784
EVEC_0000710001 Enterobius vermicularis EVEC_0000710001 I 0.763
scrt Drosophila melanogaster FBgn0004880 D 0.785
CG12605 Drosophila melanogaster FBgn0035481 D 0.767
GA11715 Drosophila pseudoobscura FBgn0071765 I 0.767
GF24781 Drosophila ananassae FBgn0101774 I 0.767
GF25020 Drosophila ananassae FBgn0102012 I 0.785
GG14232 Drosophila erecta FBgn0106493 I 0.767
GG15174 Drosophila erecta FBgn0107427 I 0.785
GH15771 Drosophila grimshawi FBgn0123242 I 0.785
GI12551 Drosophila mojavensis FBgn0135308 I 0.785
GI12763 Drosophila mojavensis FBgn0135520 I 0.764
GM11368 Drosophila sechellia FBgn0166311 I 0.785
GM14024 Drosophila sechellia FBgn0168953 I 0.767
GM14603 Drosophila sechellia FBgn0169524 I 0.785
GD13304 Drosophila simulans FBgn0185023 I 0.767
GD13305 Drosophila simulans FBgn0185024 I 0.767
GD13794 Drosophila simulans FBgn0185494 I 0.785
GJ16103 Drosophila virilis FBgn0203288 I 0.785
GJ16104 Drosophila virilis FBgn0203289 I 0.764
GK16692 Drosophila willistoni FBgn0218694 I 0.767
GK17507 Drosophila willistoni FBgn0219506 I 0.785
GE20660 Drosophila yakuba FBgn0237965 I 0.767
GE21392 Drosophila yakuba FBgn0238652 I 0.785
HHAL001092-PA Halyomorpha halys HHAL001092-PA I 0.792
HHAL001095-PA Halyomorpha halys HHAL001095-PA I 0.792
HMEL014701 Heliconius melpomene HMEL014701 I 0.790
ISCW021315 Ixodes scapularis ISCW021315 I 0.794
KGM_21493 Danaus plexippus KGM_21493 I 0.790
L596_g15116 Steinernema carpocapsae L596_g15116 I 0.763
L798_11766 Zootermopsis nevadensis L798_11766 I 0.783
L889_g21793 Steinernema feltiae L889_g21793 I 0.765
L892_g9690 Steinernema scapterisci L892_g9690 I 0.763
L893_g27175 Steinernema glaseri L893_g27175 I 0.773
L898_g5709 Steinernema monticolum L898_g5709 I 0.765
LCUP005777 Lucilia cuprina LCUP005777 I 0.765
LCUP005780 Lucilia cuprina LCUP005780 I 0.785
LLOJ003272 Lutzomyia longipalpis LLOJ003272 I 0.783
LotgiG58520 Lottia gigantea LotgiG58520 I 0.763
MCINX009924 Melitaea cinxia MCINX009924 I 0.756
MCINX009925 Melitaea cinxia MCINX009925 I 0.790
MDOA001622 Musca domestica MDOA001622 I 0.765
MDOA005810 Musca domestica MDOA005810 I 0.785
MESCA005876 Megaselia scalaris MESCA005876 I 0.764
NEMVEDRAFT_v1g108258 Nematostella vectensis NEMVEDRAFT_v1g108258 I 0.781
nRc.2.0.1.g22231 Romanomermis culicivorax nRc.2.0.1.g22231 I 0.767
Ocbimv22039583m.g Octopus bimaculoides Ocbimv22039583m.g I 0.774
Ogr05737 Ophisaurus gracilis Ogr05737 I 0.792
PHUM474050 Pediculus humanus PHUM474050 I 0.756
PHUM474180 Pediculus humanus PHUM474180 I 0.783
PPAI000594 Phlebotomus papatasi PPAI000594 I 0.783
PTRK_0000719800 Parastrongyloides trichosuri PTRK_0000719800 I 0.768
Pvit_17685 Pogona vitticeps Pvit_17685 I 0.782
PXEA_0002510801 Protopolystoma xenopodis PXEA_0002510801 I 0.775
Sakowv30035375m.g Saccoglossus kowalevskii Sakowv30035375m.g I 0.782
SCUD_0000371801 Schistosoma curassoni SCUD_0000371801 I 0.763
Sjc_0100840 Schistosoma japonicum Sjc_0100840 I 0.763
SMAR010760 Strigamia maritima SMAR010760 I 0.792
Smp_054430 Schistosoma mansoni Smp_054430 I 0.763
SMRZ_0000904801 Schistosoma margrebowiei SMRZ_0000904801 I 0.763
SMTD_0000188801 Schistosoma mattheei SMTD_0000188801 I 0.763
SMU15013927 Schmidtea mediterranea SMU15013927 I 0.763
SMUV_0000843501 Syphacia muris SMUV_0000843501 I 0.763
SPAL_0000842500 Strongyloides papillosus SPAL_0000842500 I 0.768
SPU_018393 Strongylocentrotus purpuratus SPU_018393 I 0.790
SSTP_0000144900 Strongyloides stercoralis SSTP_0000144900 I 0.768
SVE_1799900 Strongyloides venezuelensis SVE_1799900 I 0.768
T265_09545 Opisthorchis viverrini T265_09545 I 0.763
TCNE_0000669301 Toxocara canis TCNE_0000669301 I 0.763
tetur08g05890 Tetranychus urticae tetur08g05890 I 0.792
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I 0.759
TRE_0000944501 Trichobilharzia regenti TRE_0000944501 I 0.763
TriadG20314 Trichoplax adhaerens TriadG20314 I 0.780
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I 0.759
scrt2 Xenopus tropicalis XB-GENE-5995512 I 0.792