ZNF449 (Vicugna pacos)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSVPAG00000002342 T113469_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF449
M04560_2.00 		Homo sapiens
NTGYTKGCWCGCGAB
VTCGCGWGCMARCAN		 SELEX
Yin et al.(2017)
ZNF449_eDBD_HT-SELEX_1 		0.823 0.975
ZNF449
M04561_2.00 		Homo sapiens
RCGCCCAACC
GGTTGGGCGY		 SELEX
Yin et al.(2017)
ZNF449_eDBD_HT-SELEX_2 		0.823 0.975
ZNF449
M08344_2.00 		Homo sapiens
NNVAGCCCARCCHNNNNNNNN
NNNNNNNNDGGYTGGGCTBNN		 ChIP-seq
Schmitges et al.(2016)
Q6P9G9_1-7.RCADE 		0.823 0.975
ZNF449
M08922_2.00 		Homo sapiens
VAGCCCARCCN
NGGYTGGGCTB		 Misc
Kulakovskiy et al.(2013)
ZN449_HUMAN.H11MO.0.C 		0.823 0.975
ZNF449
M04562_2.00 		Homo sapiens
MMGCCCMACC
GGTKGGGCKK		 SELEX
Yin et al.(2017)
ZNF449_eDBD_Methyl-HT-SELEX_1 		0.823 0.975
ZNF449
M04563_2.00 		Homo sapiens
NTGYTKGCDCGCGWB
VWCGCGHGCMARCAN		 SELEX
Yin et al.(2017)
ZNF449_eDBD_Methyl-HT-SELEX_2 		0.823 0.975
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000002165 C2H2 ZF 323 345
ENSVPAP00000002165 C2H2 ZF 351 373
ENSVPAP00000002165 C2H2 ZF 379 401
ENSVPAP00000002165 C2H2 ZF 407 429
ENSVPAP00000002165 C2H2 ZF 435 457
ENSVPAP00000002165 C2H2 ZF 463 485
ENSVPAP00000002165 C2H2 ZF 491 513

Links

Other C2H2 ZF family TFs
Other Vicugna pacos TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004746 Ricinus communis 29929.m004746 N
30147.m013794 Ricinus communis 30147.m013794 N
cassava33470.m1 Manihot esculenta cassava33470.m1 N
Ca_08777 Cicer arietinum Ca_08777 N
Ciclev10019777m.g Citrus clementina Ciclev10019777m.g N
Ciclev10031305m.g Citrus clementina Ciclev10031305m.g N
Eucgr.H04688 Eucalyptus grandis Eucgr.H04688 N
gene22702-v1.0-hybrid Fragaria vesca gene22702-v1.0-hybrid N
GLYMA05G03020 Glycine max GLYMA05G03020 N
GLYMA17G13680 Glycine max GLYMA17G13680 N
Gorai.006G270800 Gossypium raimondii Gorai.006G270800 N
Lus10017930.g Linum usitatissimum Lus10017930.g N
Lus10036932.g Linum usitatissimum Lus10036932.g N
Lus10037055.g Linum usitatissimum Lus10037055.g N
mgf020930m Mimulus guttatus mgf020930m N
MTR_4g104020 Medicago truncatula MTR_4g104020 N
orange1.1g037028m.g Citrus sinensis orange1.1g037028m.g N
orange1.1g040125m.g Citrus sinensis orange1.1g040125m.g N
PK09859.1 Cannabis sativa PK09859.1 N
Pm006846 Prunus mume Pm006846 N
Pm024459 Prunus mume Pm024459 N
POPTR_0012s09550 Populus trichocarpa POPTR_0012s09550 N
POPTR_0015s10310 Populus trichocarpa POPTR_0015s10310 N
PRUPE_ppa016418mg Prunus persica PRUPE_ppa016418mg N
PRUPE_ppa026722mg Prunus persica PRUPE_ppa026722mg N
Solyc03g110950.1 Solanum lycopersicum Solyc03g110950.1 N
TCM_010708 Theobroma cacao TCM_010708 N
TCM_014574 Theobroma cacao TCM_014574 N
VIT_17s0000g10300 Vitis vinifera VIT_17s0000g10300 N