Pavir.J14096 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J14096 T143414_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.803 0.929
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.803 0.929
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J14096.1.p C2H2 ZF 365 387
Pavir.J14096.1.p C2H2 ZF 388 413

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL011380 Aedes aegypti AAEL011380 N
AAH44009 Xenopus laevis AAH44009 N
AAI68534 Xenopus tropicalis AAI68534 N
AALB006743 Anopheles albimanus AALB006743 N
AARA010318 Anopheles arabiensis AARA010318 N
AATE010886 Anopheles atroparvus AATE010886 N
AATE018776 Anopheles atroparvus AATE018776 N
ACEP16613 Atta cephalotes ACEP16613 N
ACOC_0000768601 Angiostrongylus costaricensis ACOC_0000768601 N
ACUA021022 Anopheles culicifacies ACUA021022 N
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N
ADAC001494 Anopheles darlingi ADAC001494 N
ADIR000367 Anopheles dirus ADIR000367 N
ADIR011701 Anopheles dirus ADIR011701 N
AEPI002924 Anopheles epiroticus AEPI002924 N
AEPI003041 Anopheles epiroticus AEPI003041 N
AFAF003948 Anopheles farauti AFAF003948 N
AFUN010134 Anopheles funestus AFUN010134 N
AGAP000005 Anopheles gambiae AGAP000005 N
AMAM015540 Anopheles maculatus AMAM015540 N
AMEC021909 Anopheles melas AMEC021909 N
AMEM017336 Anopheles merus AMEM017336 N
AMIN005344 Anopheles minimus AMIN005344 N
Aqu1.227714 Amphimedon queenslandica Aqu1.227714 N
ASIM_0000048401 Anisakis simplex ASIM_0000048401 N
ASIS000124 Anopheles sinensis ASIS000124 N
ASIS009950 Anopheles sinensis ASIS009950 N
augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 N
A_00070 Schistosoma haematobium A_00070 N
BGIBMGA001132 Bombyx mori BGIBMGA001132 N
BGLB010942 Biomphalaria glabrata BGLB010942 N
CapteG158220 Capitella teleta CapteG158220 N
Cflo_05895--XP_001121384.1_APIME Camponotus floridanus Cflo_05895--XP_001121384.1_APIME N
CGI_10023724 Crassostrea gigas CGI_10023724 N
CPIJ014043 Culex quinquefasciatus CPIJ014043 N
CpipJ_CPIJ014043 Culex pipiens CpipJ_CPIJ014043 N
csin112095 Clonorchis sinensis csin112095 N
D915_00818 Fasciola hepatica D915_00818 N
D917_01254 Trichinella nativa D917_01254 N
D918_07195 Trichuris suis D918_07195 N
DAPPUDRAFT_232871 Daphnia pulex DAPPUDRAFT_232871 N
DAPPUDRAFT_306496 Daphnia pulex DAPPUDRAFT_306496 N
DILT_0001497901 Diphyllobothrium latum DILT_0001497901 N
ECANG7_02036 Echinococcus canadensis ECANG7_02036 N
EFV57410 Trichinella spiralis EFV57410 N
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N
ENSAMXG00000014832 Astyanax mexicanus ENSAMXG00000014832 N
ENSBTAG00000031711 Bos taurus ENSBTAG00000031711 N
hmg1/2 Ciona intestinalis ENSCING00000004075 N
ENSCJAG00000004401 Callithrix jacchus ENSCJAG00000004401 N
ENSCJAG00000007419 Callithrix jacchus ENSCJAG00000007419 N
ENSCJAG00000014214 Callithrix jacchus ENSCJAG00000014214 N
ENSCJAG00000022832 Callithrix jacchus ENSCJAG00000022832 N
ENSCJAG00000033322 Callithrix jacchus ENSCJAG00000033322 N
ENSCSAG00000013078 Chlorocebus sabaeus ENSCSAG00000013078 N
ENSCSAVG00000000341 Ciona savignyi ENSCSAVG00000000341 N
hmgb3b Danio rerio ENSDARG00000006408 N
hmgb2a Danio rerio ENSDARG00000029722 N
hmgb1a Danio rerio ENSDARG00000099175 N
ENSDNOG00000005537 Dasypus novemcinctus ENSDNOG00000005537 N
ENSFCAG00000028961 Felis catus ENSFCAG00000028961 N
hmgb2b Gasterosteus aculeatus ENSGACG00000001173 N
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N
ENSGMOG00000010060 Gadus morhua ENSGMOG00000010060 N
HMGB2 Macaca mulatta ENSMMUG00000020008 N
ENSMPUG00000018359 Mustela putorius furo ENSMPUG00000018359 N
ENSMPUG00000020113 Mustela putorius furo ENSMPUG00000020113 N
ENSOARG00000010383 Ovis aries ENSOARG00000010383 N
ENSOARG00000011611 Ovis aries ENSOARG00000011611 N
ENSOARG00000015382 Ovis aries ENSOARG00000015382 N
ENSOARG00000015955 Ovis aries ENSOARG00000015955 N
ENSOCUG00000004133 Oryctolagus cuniculus ENSOCUG00000004133 N
ENSOCUG00000021132 Oryctolagus cuniculus ENSOCUG00000021132 N
HMGB3 Oryctolagus cuniculus ENSOCUG00000024959 N
ENSONIG00000005505 Oreochromis niloticus ENSONIG00000005505 N
ENSONIG00000019935 Oreochromis niloticus ENSONIG00000019935 N
hmgb1a Oryzias latipes ENSORLG00000003400 N
hmgb2b Oryzias latipes ENSORLG00000018687 N
ENSPANG00000007527 Papio anubis ENSPANG00000007527 N
ENSPANG00000010595 Papio anubis ENSPANG00000010595 N
ENSPANG00000023341 Papio anubis ENSPANG00000023341 N
ENSPFOG00000004533 Poecilia formosa ENSPFOG00000004533 N
ENSPFOG00000004794 Poecilia formosa ENSPFOG00000004794 N
ENSPFOG00000008464 Poecilia formosa ENSPFOG00000008464 N
ENSPMAG00000007397 Petromyzon marinus ENSPMAG00000007397 N
Hmgb2l1 Rattus norvegicus ENSRNOG00000013167 N
RGD1561694 Rattus norvegicus ENSRNOG00000029107 N
Hmgb2 Rattus norvegicus ENSRNOG00000033321 N
LOC688583 Rattus norvegicus ENSRNOG00000050910 N
HMGB2 Sus scrofa ENSSSCG00000009704 N
ENSSSCG00000020770 Sus scrofa ENSSSCG00000020770 N
ENSSSCG00000024283 Sus scrofa ENSSSCG00000024283 N
ENSSTOG00000012404 Ictidomys tridecemlineatus ENSSTOG00000012404 N
hmgb2b Tetraodon nigroviridis ENSTNIG00000004824 N
hmgb1b Takifugu rubripes ENSTRUG00000004822 N
hmgb2b Takifugu rubripes ENSTRUG00000005015 N
hmgb1a Takifugu rubripes ENSTRUG00000008452 N
ENSXMAG00000006844 Xiphophorus maculatus ENSXMAG00000006844 N
ENSXMAG00000011106 Xiphophorus maculatus ENSXMAG00000011106 N
Dsp1 Drosophila melanogaster FBgn0011764 N
GA11488 Drosophila pseudoobscura FBgn0071539 N
GF19115 Drosophila ananassae FBgn0096126 N
GG17955 Drosophila erecta FBgn0110175 N
GH12282 Drosophila grimshawi FBgn0119761 N
GI10980 Drosophila mojavensis FBgn0133743 N
GD17278 Drosophila simulans FBgn0188840 N
GJ19445 Drosophila virilis FBgn0206588 N
GK25058 Drosophila willistoni FBgn0227017 N
GE17263 Drosophila yakuba FBgn0234741 N
fgenesh2_pm.scaffold_24000033 Branchiostoma floridae fgenesh2_pm.scaffold_24000033 N
GB47828 Apis mellifera GB47828 N
genemark-nMf.1.1.scaf06964-processed-gene-0.3 Meloidogyne floridensis genemark-nMf.1.1.scaf06964-processed-gene-0.3 N
Hba_13817 Heterorhabditis bacteriophora Hba_13817 N
HCOI00860100 Haemonchus contortus HCOI00860100 N
HDID_0000237901 Hymenolepis diminuta HDID_0000237901 N
HelroG157726 Helobdella robusta HelroG157726 N
HelroG157878 Helobdella robusta HelroG157878 N
HelroG87827 Helobdella robusta HelroG87827 N
HMEL007340 Heliconius melpomene HMEL007340 N
HmN_000466000 Hymenolepis microstoma HmN_000466000 N
HNAJ_0001249801 Hymenolepis nana HNAJ_0001249801 N
Hsal_13110--XP_001121384.1_APIME Harpegnathos saltator Hsal_13110--XP_001121384.1_APIME N
ISCW017350 Ixodes scapularis ISCW017350 N
L889_g13533 Steinernema feltiae L889_g13533 N
LCUP007363 Lucilia cuprina LCUP007363 N
LDEC006842 Leptinotarsa decemlineata LDEC006842 N
LotgiG200052 Lottia gigantea LotgiG200052 N
MCINX009638 Melitaea cinxia MCINX009638 N
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N
MDOA008812 Musca domestica MDOA008812 N
MhA1_Contig113.frz3.gene9 Meloidogyne hapla MhA1_Contig113.frz3.gene9 N
Minc03268 Meloidogyne incognita Minc03268 N
Minc08988 Meloidogyne incognita Minc08988 N
Myotis_brandtii_Hmgb2_10018437 Myotis brandtii Myotis_brandtii_Hmgb2_10018437 N
Myotis_brandtii_HMGB3_10026974 Myotis brandtii Myotis_brandtii_HMGB3_10026974 N
NBR_0000911001 Nippostrongylus brasiliensis NBR_0000911001 N
NECAME_09126 Necator americanus NECAME_09126 N
nRc.2.0.1.g43473 Romanomermis culicivorax nRc.2.0.1.g43473 N
NV15664 Nasonia vitripennis NV15664 N
PHUM006290 Pediculus humanus PHUM006290 N
Ppa-hmg-1.2 Pristionchus pacificus PPA02361 N
PXEA_0000566701 Protopolystoma xenopodis PXEA_0000566701 N
PXEA_0000637001 Protopolystoma xenopodis PXEA_0000637001 N
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N
RPRC006379 Rhodnius prolixus RPRC006379 N
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N
SBAD_0000405201 Soboliphyme baturini SBAD_0000405201 N
scaffold580-EXSNAP2012.5 Pristionchus exspectatus scaffold580-EXSNAP2012.5 N
SCUD_0000020101 Schistosoma curassoni SCUD_0000020101 N
SCUD_0001034301 Schistosoma curassoni SCUD_0001034301 N
SINV22586 Solenopsis invicta SINV22586 N
Sjc_0031360 Schistosoma japonicum Sjc_0031360 N
Sjc_0051340 Schistosoma japonicum Sjc_0051340 N
SMAR013695 Strigamia maritima SMAR013695 N
Smp_000980 Schistosoma mansoni Smp_000980 N
Smp_100090 Schistosoma mansoni Smp_100090 N
SMRZ_0000842001 Schistosoma margrebowiei SMRZ_0000842001 N
SMTD_0001017101 Schistosoma mattheei SMTD_0001017101 N
SMTD_0001194601 Schistosoma mattheei SMTD_0001194601 N
SMU15002907 Schmidtea mediterranea SMU15002907 N
SMU15016767 Schmidtea mediterranea SMU15016767 N
SMU15027649 Schmidtea mediterranea SMU15027649 N
SMU15030256 Schmidtea mediterranea SMU15030256 N
SPU_005572 Strongylocentrotus purpuratus SPU_005572 N
SROB_0000153901 Schistosoma rodhaini SROB_0000153901 N
SROB_0000500401 Schistosoma rodhaini SROB_0000500401 N
SSLN_0000493501 Schistocephalus solidus SSLN_0000493501 N
SSLN_0001302101 Schistocephalus solidus SSLN_0001302101 N
T265_10726 Opisthorchis viverrini T265_10726 N
T265_12733 Opisthorchis viverrini T265_12733 N
TELCIR_07111 Teladorsagia circumcincta TELCIR_07111 N
tetur02g08260 Tetranychus urticae tetur02g08260 N
tetur02g08340 Tetranychus urticae tetur02g08340 N
TRE_0000690301 Trichobilharzia regenti TRE_0000690301 N
TsM_000115400 Taenia solium TsM_000115400 N
TTAC_0000225801 Hydatigera taeniaeformis TTAC_0000225801 N
TTRE_0000338301 Trichuris trichiura TTRE_0000338301 N
hmgb2.S Xenopus laevis XB-GENE-1000251 N
YQE_03203 Dendroctonus ponderosae YQE_03203 N