Ppa-hmg-1.2 (Pristionchus pacificus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PPA02361 T332169_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PPA02361 Sox 33 102
PPA02361 Sox 118 186

Links

Other Sox family TFs
Other Pristionchus pacificus TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold580-EXSNAP2012.5 Pristionchus exspectatus scaffold580-EXSNAP2012.5 N 0.741
ASU_03902 Ascaris suum ASU_03902 N 0.702
EVEC_0000577301 Enterobius vermicularis EVEC_0000577301 N 0.702
PEQ_0000150901 Parascaris equorum PEQ_0000150901 N 0.702
SMUV_0000232601 Syphacia muris SMUV_0000232601 N 0.702
TCLT_0000879501 Thelazia callipaeda TCLT_0000879501 N 0.702
TCNE_0000567001 Toxocara canis TCNE_0000567001 N 0.702
L596_g22130 Steinernema carpocapsae L596_g22130 N 0.700
L892_g17551 Steinernema scapterisci L892_g17551 N 0.700
L893_g5947 Steinernema glaseri L893_g5947 N 0.700
Bm4180 Brugia malayi Bm4180 N 0.699
LOAG_04936 Loa loa LOAG_04936 N 0.699
WBGene00245261 Onchocerca volvulus WBGene00245261 N 0.699
EEL_0000068601 Elaeophora elaphi EEL_0000068601 N 0.699
nAv.1.0.1.g02101 Acanthocheilonema viteae nAv.1.0.1.g02101 N 0.699
nDi.2.2.2.g04979 Dirofilaria immitis nDi.2.2.2.g04979 N 0.699
L889_g13533 Steinernema feltiae L889_g13533 N 0.695
ACOC_0000768601 Angiostrongylus costaricensis ACOC_0000768601 N 0.684
HCOI00860100 Haemonchus contortus HCOI00860100 N 0.684
NBR_0000911001 Nippostrongylus brasiliensis NBR_0000911001 N 0.684
NECAME_09126 Necator americanus NECAME_09126 N 0.684
TELCIR_07111 Teladorsagia circumcincta TELCIR_07111 N 0.684
DME_0001055201 Dracunculus medinensis DME_0001055201 N 0.683
Hba_13817 Heterorhabditis bacteriophora Hba_13817 N 0.681
ASIM_0000048401 Anisakis simplex ASIM_0000048401 N 0.668
CBN17977 Caenorhabditis brenneri CBN17977 N 0.657
D918_07195 Trichuris suis D918_07195 N 0.656
CJA09678 Caenorhabditis japonica CJA09678 N 0.654
CBG17468 Caenorhabditis briggsae CBG17468 N 0.652
hmg-1.2 Caenorhabditis elegans WBGene00001972 N 0.652
TTRE_0000338301 Trichuris trichiura TTRE_0000338301 N 0.652
WUBG_12099 Wuchereria bancrofti WUBG_12099 N 0.647
TMUE_s0235000800 Trichuris muris TMUE_s0235000800 N 0.641
RSKR_0000605700 Rhabditophanes kr3021 RSKR_0000605700 N 0.637
PTRK_0000986200 Parastrongyloides trichosuri PTRK_0000986200 N 0.635
SPAL_0001030300 Strongyloides papillosus SPAL_0001030300 N 0.635
SSTP_0000371800 Strongyloides stercoralis SSTP_0000371800 N 0.635
SVE_0494300 Strongyloides venezuelensis SVE_0494300 N 0.635
ANCCAN_10156 Ancylostoma caninum ANCCAN_10156 N 0.632
augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 N 0.630
genemark-nMf.1.1.scaf06964-processed-gene-0.3 Meloidogyne floridensis genemark-nMf.1.1.scaf06964-processed-gene-0.3 N 0.630
nRc.2.0.1.g43473 Romanomermis culicivorax nRc.2.0.1.g43473 N 0.629
D917_08189 Trichinella nativa D917_08189 N 0.627
SBAD_0000405201 Soboliphyme baturini SBAD_0000405201 N 0.624
CJA42049 Caenorhabditis japonica CJA42049 N 0.623
ACAC_0001052301 Angiostrongylus cantonensis ACAC_0001052301 N 0.618
nLs.2.1.2.g00300 Litomosoides sigmodontis nLs.2.1.2.g00300 N 0.615
CRE02943 Caenorhabditis remanei CRE02943 N 0.608
ANCCEY_10333 Ancylostoma ceylanicum ANCCEY_10333 N 0.597
EFV57410 Trichinella spiralis EFV57410 N 0.593
D917_01254 Trichinella nativa D917_01254 N 0.593
GPUH_0001544201 Gongylonema pulchrum GPUH_0001544201 N 0.592
EFV53345 Trichinella spiralis EFV53345 N 0.589
BXY_1555400 Bursaphelenchus xylophilus BXY_1555400 N 0.577
Minc03268 Meloidogyne incognita Minc03268 N 0.574
Minc08988 Meloidogyne incognita Minc08988 N 0.574
MhA1_Contig113.frz3.gene9 Meloidogyne hapla MhA1_Contig113.frz3.gene9 N 0.574
TELCIR_06008 Teladorsagia circumcincta TELCIR_06008 N 0.551
CapteG158220 Capitella teleta CapteG158220 N 0.508
Minc01077 Meloidogyne incognita Minc01077 N 0.498
tetur02g08260 Tetranychus urticae tetur02g08260 N 0.489
CGI_10023724 Crassostrea gigas CGI_10023724 N 0.487
tetur02g08340 Tetranychus urticae tetur02g08340 N 0.486
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N 0.484
ISCW017350 Ixodes scapularis ISCW017350 N 0.478
SMAR013695 Strigamia maritima SMAR013695 N 0.472
NV15664 Nasonia vitripennis NV15664 N 0.469
fgenesh2_pm.scaffold_24000033 Branchiostoma floridae fgenesh2_pm.scaffold_24000033 N 0.461
AAEL011380 Aedes aegypti AAEL011380 N 0.459
ADAC001494 Anopheles darlingi ADAC001494 N 0.459
AGAP000005 Anopheles gambiae AGAP000005 N 0.459
AALB006743 Anopheles albimanus AALB006743 N 0.459
AARA010318 Anopheles arabiensis AARA010318 N 0.459
AATE018776 Anopheles atroparvus AATE018776 N 0.459
ACUA021022 Anopheles culicifacies ACUA021022 N 0.459
ADIR011701 Anopheles dirus ADIR011701 N 0.459
AEPI002924 Anopheles epiroticus AEPI002924 N 0.459
AFAF003948 Anopheles farauti AFAF003948 N 0.459
AFUN010134 Anopheles funestus AFUN010134 N 0.459
AMAM015540 Anopheles maculatus AMAM015540 N 0.459
AMEC021909 Anopheles melas AMEC021909 N 0.459
AMEM017336 Anopheles merus AMEM017336 N 0.459
AMIN005344 Anopheles minimus AMIN005344 N 0.459
ASIS000124 Anopheles sinensis ASIS000124 N 0.459
SMU15027649 Schmidtea mediterranea SMU15027649 N 0.458
Cflo_05895--XP_001121384.1_APIME Camponotus floridanus Cflo_05895--XP_001121384.1_APIME N 0.456
Hsal_13110--XP_001121384.1_APIME Harpegnathos saltator Hsal_13110--XP_001121384.1_APIME N 0.456
T265_12733 Opisthorchis viverrini T265_12733 N 0.455
YQE_03203 Dendroctonus ponderosae YQE_03203 N 0.453
D915_00818 Fasciola hepatica D915_00818 N 0.453
ACEP16613 Atta cephalotes ACEP16613 N 0.452
SINV22586 Solenopsis invicta SINV22586 N 0.452
BXY_1714600 Bursaphelenchus xylophilus BXY_1714600 N 0.449
PHUM006290 Pediculus humanus PHUM006290 N 0.446
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.446
SSLN_0001302101 Schistocephalus solidus SSLN_0001302101 N 0.446
ENSBTAG00000031711 Bos taurus ENSBTAG00000031711 N 0.445
LOC688583 Rattus norvegicus ENSRNOG00000050910 N 0.445
HMEL007340 Heliconius melpomene HMEL007340 N 0.445
Smp_000980 Schistosoma mansoni Smp_000980 N 0.445
SCUD_0000020101 Schistosoma curassoni SCUD_0000020101 N 0.445
SMTD_0001194601 Schistosoma mattheei SMTD_0001194601 N 0.445
SROB_0000153901 Schistosoma rodhaini SROB_0000153901 N 0.445
Dsp1 Drosophila melanogaster FBgn0011764 N 0.444
GA11488 Drosophila pseudoobscura FBgn0071539 N 0.444
GF19115 Drosophila ananassae FBgn0096126 N 0.444
GG17955 Drosophila erecta FBgn0110175 N 0.444
GD17278 Drosophila simulans FBgn0188840 N 0.444
GE17263 Drosophila yakuba FBgn0234741 N 0.444
Aqu1.227714 Amphimedon queenslandica Aqu1.227714 N 0.443
ENSMPUG00000018359 Mustela putorius furo ENSMPUG00000018359 N 0.443
HMGB3 Oryctolagus cuniculus ENSOCUG00000024959 N 0.443
ENSSSCG00000020770 Sus scrofa ENSSSCG00000020770 N 0.443
ENSSSCG00000024283 Sus scrofa ENSSSCG00000024283 N 0.443
PXEA_0000637001 Protopolystoma xenopodis PXEA_0000637001 N 0.442
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N 0.441
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N 0.441
TsM_000115400 Taenia solium TsM_000115400 N 0.441
CpipJ_CPIJ014043 Culex pipiens CpipJ_CPIJ014043 N 0.440
CPIJ014043 Culex quinquefasciatus CPIJ014043 N 0.440
GH12282 Drosophila grimshawi FBgn0119761 N 0.440
GI10980 Drosophila mojavensis FBgn0133743 N 0.440
GJ19445 Drosophila virilis FBgn0206588 N 0.440
GK25058 Drosophila willistoni FBgn0227017 N 0.440
LCUP007363 Lucilia cuprina LCUP007363 N 0.440
ENSCJAG00000014214 Callithrix jacchus ENSCJAG00000014214 N 0.439
ENSCJAG00000033322 Callithrix jacchus ENSCJAG00000033322 N 0.439
ENSCSAG00000013078 Chlorocebus sabaeus ENSCSAG00000013078 N 0.439
Sjc_0051340 Schistosoma japonicum Sjc_0051340 N 0.436
DAPPUDRAFT_232871 Daphnia pulex DAPPUDRAFT_232871 N 0.434
LDEC006842 Leptinotarsa decemlineata LDEC006842 N 0.434
A_00070 Schistosoma haematobium A_00070 N 0.432
SCUD_0001034301 Schistosoma curassoni SCUD_0001034301 N 0.432
SMRZ_0000842001 Schistosoma margrebowiei SMRZ_0000842001 N 0.432
SMTD_0001017101 Schistosoma mattheei SMTD_0001017101 N 0.432
AQUA004962 Anopheles quadriannulatus AQUA004962 N 0.431
ENSCJAG00000004401 Callithrix jacchus ENSCJAG00000004401 N 0.430
HelroG157878 Helobdella robusta HelroG157878 N 0.430
Smp_100090 Schistosoma mansoni Smp_100090 N 0.429
SROB_0000500401 Schistosoma rodhaini SROB_0000500401 N 0.429
HelroG157726 Helobdella robusta HelroG157726 N 0.428
ENSCJAG00000007419 Callithrix jacchus ENSCJAG00000007419 N 0.426
Sjc_0031360 Schistosoma japonicum Sjc_0031360 N 0.426
BGIBMGA001132 Bombyx mori BGIBMGA001132 N 0.425
MDOA008812 Musca domestica MDOA008812 N 0.425
HDID_0000237901 Hymenolepis diminuta HDID_0000237901 N 0.423
HmN_000466000 Hymenolepis microstoma HmN_000466000 N 0.423
HNAJ_0001249801 Hymenolepis nana HNAJ_0001249801 N 0.423
hmgb2a Danio rerio ENSDARG00000029722 N 0.421
ECANG7_02036 Echinococcus canadensis ECANG7_02036 N 0.421
TTAC_0000225801 Hydatigera taeniaeformis TTAC_0000225801 N 0.421
ENSPANG00000010595 Papio anubis ENSPANG00000010595 N 0.420
SPU_005572 Strongylocentrotus purpuratus SPU_005572 N 0.417
AAH44009 Xenopus laevis AAH44009 N 0.417
PXEA_0000566701 Protopolystoma xenopodis PXEA_0000566701 N 0.417
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N 0.416
SMU15002907 Schmidtea mediterranea SMU15002907 N 0.415